PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa12g007990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | WOX | ||||||||
Protein Properties | Length: 269aa MW: 29591.8 Da PI: 5.7798 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.3 | 1.7e-20 | 99 | 159 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql++Le+ F + + +ps++++++++++l ++ e++V++WFqNrRa+ k+ Csa12g007990.1 99 RQRWTPTPVQLQILERIFDQgTGTPSKQKIKDITEELsqhgQIAEQNVYNWFQNRRARSKR 159 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 103.4 | 1.6e-33 | 98 | 161 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q++iLe+++++G+ tP+k++i++it+eL+++G+i ++NV++WFQNr+aR+++kq Csa12g007990.1 98 ARQRWTPTPVQLQILERIFDQGTGTPSKQKIKDITEELSQHGQIAEQNVYNWFQNRRARSKRKQ 161 789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.8E-17 | 94 | 162 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.673 | 95 | 160 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.85E-17 | 95 | 161 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 5.8E-14 | 97 | 164 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.7E-18 | 99 | 159 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.01E-12 | 99 | 161 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MMEWDHQPQP NNHHSSNLQG IDVNGGGSVA GGGGMYVKVM TDEQYETLRK QIAIYGTICE 60 RLVEMHKTLT AQQDLAGGRL GGLYADPMMS SIGHKMTARQ RWTPTPVQLQ ILERIFDQGT 120 GTPSKQKIKD ITEELSQHGQ IAEQNVYNWF QNRRARSKRK QHGGGGGSSG NNNNESEVET 180 EVEALNEKRR PESLLGLPDG NNNNNGLGTA TTTAPRPEDL CFQSPEMSSD LHLLGVLSNP 240 RDEHLVGKMG LSESYNLYDH VEDYGMSG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 152 | 160 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa12g007990.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY048268 | 0.0 | AY048268.1 Arabidopsis thaliana AT4g35550/F8D20_60 mRNA, complete cds. | |||
GenBank | AY251404 | 0.0 | AY251404.1 Arabidopsis thaliana WOX13 protein mRNA, complete cds. | |||
GenBank | BT000538 | 0.0 | BT000538.1 Arabidopsis thaliana homeodomain - like protein (At4g35550/F8D20_60) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010446911.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 13 | ||||
Swissprot | O81788 | 1e-163 | WOX13_ARATH; WUSCHEL-related homeobox 13 | ||||
TrEMBL | A0A178UZQ1 | 1e-161 | A0A178UZQ1_ARATH; WOX13 | ||||
TrEMBL | D7MCZ4 | 1e-161 | D7MCZ4_ARALL; Homeobox-leucine zipper protein | ||||
TrEMBL | R0GXF7 | 1e-160 | R0GXF7_9BRAS; Uncharacterized protein | ||||
STRING | XP_010446911.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4620 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 1e-141 | WUSCHEL related homeobox 13 |
Publications ? help Back to Top | |||
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