PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa11g033920.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | CAMTA | ||||||||
Protein Properties | Length: 466aa MW: 53123.5 Da PI: 7.3346 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 164 | 2.6e-51 | 30 | 146 | 3 | 118 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e +rwl+++ei+a+L n++ +++ ++ + pksg+++L++rk++r+frkDG++wkkkkdgkt++E+he+LKvg+ e +++yYah+++nptf r Csa11g033920.1 30 DEaYTRWLRPNEIHALLCNHKFFTINVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTIKEAHEHLKVGNEERIHVYYAHGNDNPTFVR 124 45589****************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylevk 118 rcywlL++++e+ivlvhy+e++ Csa11g033920.1 125 RCYWLLDKSQEHIVLVHYRETH 146 *******************985 PP | |||||||
2 | CG-1 | 164 | 2.6e-51 | 194 | 310 | 3 | 118 |
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e +rwl+++ei+a+L n++ +++ ++ + pksg+++L++rk++r+frkDG++wkkkkdgkt++E+he+LKvg+ e +++yYah+++nptf r Csa11g033920.1 194 DEaYTRWLRPNEIHALLCNHKFFTINVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTIKEAHEHLKVGNEERIHVYYAHGNDNPTFVR 288 45589****************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylevk 118 rcywlL++++e+ivlvhy+e++ Csa11g033920.1 289 RCYWLLDKSQEHIVLVHYRETH 310 *******************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 76.405 | 25 | 151 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 7.1E-73 | 28 | 146 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.8E-45 | 32 | 144 | IPR005559 | CG-1 DNA-binding domain |
PROSITE profile | PS51437 | 76.405 | 189 | 315 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 7.1E-73 | 192 | 310 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.8E-45 | 196 | 308 | IPR005559 | CG-1 DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
MAGVGSGKLI GSEIHGFHTL QDLDIQTMLD EAYTRWLRPN EIHALLCNHK FFTINVKPVN 60 LPKSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTIKEAHEH LKVGNEERIH VYYAHGNDNP 120 TFVRRCYWLL DKSQEHIVLV HYRETHEAQA APATPGNSYS SSISELSPKL VAEDINSGVR 180 NTCNTDLDIQ TMLDEAYTRW LRPNEIHALL CNHKFFTINV KPVNLPKSGT IVLFDRKMLR 240 NFRKDGHNWK KKKDGKTIKE AHEHLKVGNE ERIHVYYAHG NDNPTFVRRC YWLLDKSQEH 300 IVLVHYRETH EAQAAPATPG NSYSSSISEL SPKLVAEDIN SGVRNTCNTG FEVRSNSLGS 360 RNHEIRLHEI NTLDWDELLV PADISNQSHP TEEDMLYFTE QLQTAPRGST KQGYHLAGYN 420 GSVDIPSYPG LDDPVYQNNN SCGAGEFSNQ HVHCGVESNL QSRDSS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa11g033920.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY128295 | 0.0 | AY128295.1 Arabidopsis thaliana AT4g16150/dl4115w mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019087411.1 | 0.0 | PREDICTED: calmodulin-binding transcription activator 5-like | ||||
Swissprot | O23463 | 0.0 | CMTA5_ARATH; Calmodulin-binding transcription activator 5 | ||||
TrEMBL | R0GWD2 | 0.0 | R0GWD2_9BRAS; Uncharacterized protein | ||||
STRING | XP_010449842.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM31721 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16150.1 | 0.0 | calmodulin binding;transcription regulators |
Publications ? help Back to Top | |||
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