PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

ERF

Protein Properties

Length: 339aa MW: 38266.4 Da PI: 4.6512

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa11g016030.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64.7	1.9e-20	121	171	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +g+W+AeIrdp + r+r++lg+f taeeAa +++a+ kl+g Csa11g016030.1 121 KKYRGVRQRP-WGKWAAEIRDPEQ---RRRIWLGTFSTAEEAAIVYDNAAIKLRG 171 59******.******743...5***********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.99E-34	121	180	No hit	No description
PROSITE profile	PS51032	23.709	122	179	IPR001471	AP2/ERF domain
Pfam	PF00847	8.5E-13	122	171	IPR001471	AP2/ERF domain
SMART	SM00380	2.6E-40	122	185	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	2.0E-30	122	179	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.85E-22	122	179	IPR016177	DNA-binding domain
PRINTS	PR00367	1.3E-10	123	134	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.3E-10	145	161	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 339 aa Download sequence Send to blast
MMDEYMDFRP VKYTEHKTVI RKYTKKSSVE KKNKMSDGAA RDSSSSRLVR VCLIDRDATD 60 SSSDDEEFLF PRRRVKRLIN EIRVEPSSSP SSSSGDVSAS QTKDRKRLPV DPPPPPVQTQ 120 KKYRGVRQRP WGKWAAEIRD PEQRRRIWLG TFSTAEEAAI VYDNAAIKLR GPAALTNFAV 180 PPEPEPEPES NISVSTSESV DDSQHLSSPT SVLNYQTYVS EEALNDHVKP VKQEFLEPEQ 240 EPISWHLGQG NNNTNTDDSF PLDIPFLDNY FNESLPDISI FDQPMSPIHQ SSHNGFFNDL 300 VLFDSNYNTG ENCSSDIKEI GSMFNDLDDS LISDLLLV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	1e-21	121	178	1	59	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:16832061}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa11g016030.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010438528.1	0.0	PREDICTED: ethylene-responsive transcription factor CRF4-like
Swissprot	Q9SUE3	0.0	CRF4_ARATH; Ethylene-responsive transcription factor CRF4
TrEMBL	A0A178V2V5	0.0	A0A178V2V5_ARATH; CRF4
STRING	XP_010438528.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2229	25	76

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27950.1	1e-164	cytokinin response factor 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zwack PJ,Compton MA,Adams CI,Rashotte AM Cytokinin response factor 4 (CRF4) is induced by cold and involved in freezing tolerance. Plant Cell Rep., 2016. 35(3): p. 573-84 [PMID:26650835] Raines T, et al. The cytokinin response factors modulate root and shoot growth and promote leaf senescence in Arabidopsis. Plant J., 2016. 85(1): p. 134-47 [PMID:26662515]