PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa10g029670.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

CAMTA

Protein Properties

Length: 922aa MW: 104528 Da PI: 7.36

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa10g029670.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	162.5	7.7e-51	30	146	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e +rwl+++ei+a+L n++ +++ ++ + pksg+++L++rk++r+frkDG++wkkkkdgkt++E+he+LKvg+ e +++yYah+++nptf r Csa10g029670.1 30 DEaYTRWLRPNEIHALLCNHKFFTINVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTIKEAHEHLKVGNEERIHVYYAHGNDNPTFVR 124 45589**************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylevk 118 rcywlL++++e+ivlvhy+e++ Csa10g029670.1 125 RCYWLLDKSQEHIVLVHYRETH 146 *****************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	76.405	25	151	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	7.1E-73	28	146	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	5.3E-45	32	144	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	9.1E-13	372	458	IPR014756	Immunoglobulin E-set
CDD	cd00204	6.71E-14	558	668	No hit	No description
Gene3D	G3DSA:1.25.40.20	2.0E-15	558	671	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	3.6E-7	558	638	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	6.53E-16	559	679	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	13.761	576	641	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.808	609	641	IPR002110	Ankyrin repeat
SMART	SM00248	2.7E-6	609	638	IPR002110	Ankyrin repeat
PROSITE profile	PS50096	6.614	758	784	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	260	773	795	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	5.3E-4	796	818	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.761	797	821	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	7.3E-4	798	818	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	6.8	872	894	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.37	873	902	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.22	874	894	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 922 aa Download sequence Send to blast
MAGVGSGKLI GSEIHGFHTL QDLDIQTMLD EAYTRWLRPN EIHALLCNHK FFTINVKPVN 60 LPKSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTIKEAHEH LKVGNEERIH VYYAHGNDNP 120 TFVRRCYWLL DKSQEHIVLV HYRETHEAQA APATPGNSYS SSISDLSPKL VAEDINSGVR 180 NTCNTGFEVR SNSLGSRNHE IRLHEINTLD WDELLVPADI SNQSHPTEED MLYFTEQLQT 240 APRGSTKLGY HLAGYNGSVD IPSYPGLEDP VYQNNNSCGA GEFSNQHVHC GVESNLQSRD 300 SSATVADQPG DAMLNNGFGS QDSFGRWVNN FISDSPGSVD DPSLEAVYTP GQESSTTAVF 360 HSHSNIPEQV FNITDVSPAW AFSTEKTKIL VTGFFHDSFQ HFGRSNLFCI CGELRVPAEF 420 LQLGVYRCFL PPQSPGVVNL YLSVDGNKPI SQLFSFEHRS VPVIEKAIPQ DDQLYKWEEF 480 EFQVRLAHLL FTSSNKISVL TSKISPDNLL EAKKLASRTS HLLNSWAYLM KSIQANEVPF 540 DQARDHLFEL TLKNRLKEWL LEKVIENCNT KEYDSKGLGV IHLCAVLGYT WSILLFSWAN 600 ISLDFRDKHG WTALHWAAYY GREKMVAALL SAGARPNLVT DPTKEFLGGC TAADLAQQKG 660 YEGLAAFLAE KCLVAQFKDM QMAGNITGNL ETIKAEQASN LGNSNEDEQS LKDTLAAYRT 720 AAEAAARIQG AFREHELKVR SSAVRFASKE EEAKNIIAAM KIQHAFRNFE VRRKIAAAAR 780 IQYRFQTWKM RREFLNMRKK AIRIQAAFRG FQVRRQYQKI TWSVGVLEKA ILRWRLKRKG 840 FRGLQVSQPE EKEGGEEVED FYKTSQKQAE ERLERSVVKV QAMFRSKKAQ QDYRRMKLAH 900 EEAQLEYDGM QELDQMAMEE S*

Sequence ? help Back to Top

Protein Sequence Length: 922 aa Download sequence Send to blast

MAGVGSGKLI GSEIHGFHTL QDLDIQTMLD EAYTRWLRPN EIHALLCNHK FFTINVKPVN  60
LPKSGTIVLF DRKMLRNFRK DGHNWKKKKD GKTIKEAHEH LKVGNEERIH VYYAHGNDNP  120
TFVRRCYWLL DKSQEHIVLV HYRETHEAQA APATPGNSYS SSISDLSPKL VAEDINSGVR  180
NTCNTGFEVR SNSLGSRNHE IRLHEINTLD WDELLVPADI SNQSHPTEED MLYFTEQLQT  240
APRGSTKLGY HLAGYNGSVD IPSYPGLEDP VYQNNNSCGA GEFSNQHVHC GVESNLQSRD  300
SSATVADQPG DAMLNNGFGS QDSFGRWVNN FISDSPGSVD DPSLEAVYTP GQESSTTAVF  360
HSHSNIPEQV FNITDVSPAW AFSTEKTKIL VTGFFHDSFQ HFGRSNLFCI CGELRVPAEF  420
LQLGVYRCFL PPQSPGVVNL YLSVDGNKPI SQLFSFEHRS VPVIEKAIPQ DDQLYKWEEF  480
EFQVRLAHLL FTSSNKISVL TSKISPDNLL EAKKLASRTS HLLNSWAYLM KSIQANEVPF  540
DQARDHLFEL TLKNRLKEWL LEKVIENCNT KEYDSKGLGV IHLCAVLGYT WSILLFSWAN  600
ISLDFRDKHG WTALHWAAYY GREKMVAALL SAGARPNLVT DPTKEFLGGC TAADLAQQKG  660
YEGLAAFLAE KCLVAQFKDM QMAGNITGNL ETIKAEQASN LGNSNEDEQS LKDTLAAYRT  720
AAEAAARIQG AFREHELKVR SSAVRFASKE EEAKNIIAAM KIQHAFRNFE VRRKIAAAAR  780
IQYRFQTWKM RREFLNMRKK AIRIQAAFRG FQVRRQYQKI TWSVGVLEKA ILRWRLKRKG  840
FRGLQVSQPE EKEGGEEVED FYKTSQKQAE ERLERSVVKV QAMFRSKKAQ QDYRRMKLAH  900
EEAQLEYDGM QELDQMAMEE S*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa10g029670.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY128295	0.0	AY128295.1 Arabidopsis thaliana AT4g16150/dl4115w mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010434875.1	0.0	PREDICTED: calmodulin-binding transcription activator 5 isoform X5
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	R0GWD2	0.0	R0GWD2_9BRAS; Uncharacterized protein
STRING	XP_010449842.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4021	27	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]