PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa09g095030.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | FAR1 | ||||||||
Protein Properties | Length: 700aa MW: 79675 Da PI: 6.0279 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 77.4 | 2.8e-24 | 93 | 179 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Yn+YA+e+GF +r+++s ++++++e + ++C++eg++ ++ + +++++r+etrtgC+a++++k+ + ++w++++++l+HnH++ Csa09g095030.1 93 YYNSYARELGFAIRIKSSWTKRNSKEKRGAVLCCNCEGFKMVKEAN--TTSTRRKETRTGCQAMIRLKLIEFDRWKIDQVKLDHNHSFD 179 9****************************************99888..8889999*******************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-21 | 93 | 179 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.4E-26 | 303 | 397 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 8.951 | 586 | 625 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 3.1E-6 | 596 | 623 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 4.8E-5 | 600 | 627 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 700 aa Download sequence Send to blast |
MIGDSVYSPS DQSLSSPNPN LCITMEEEQM VVEQEEEEEE LPLPDLGIDL DEDDCDGLLQ 60 IETGIDDDGP IAHSAPAPAP GMEFDSYDDA YSYYNSYARE LGFAIRIKSS WTKRNSKEKR 120 GAVLCCNCEG FKMVKEANTT STRRKETRTG CQAMIRLKLI EFDRWKIDQV KLDHNHSFDP 180 ERAHNSKSHK TTKSSSASAN TKQPQQPPLH VQVRTINLYR ALAVPHGTSS SSTSSPGGDH 240 SLSSSRPLLP PGGFSFLQDF FLRIQLTSPN FLYLMDLSDD GSLRNVFWID PRARAAYSHF 300 GDVVLFDTTC LSNSYQLPLV SFVGIDHHGD SILLGCALLA HQTFETYLWL FRAWLTCMLG 360 RPPQTFITQQ CKAMRAAVSE VFPRAHHRLS LTHVLHNIFQ SVVQLQDSEL FRMALNRVVY 420 GCLKVEEFET AWEEMIIRFG LTNHETINHL FQDRELWAPV YLKDTFLAGA LTFRLGDVAA 480 PFIFSGYVHE HTSLREFLEG YQSFLDKKYT RQALCDSESS KFIPELKTTH PYESQMAKVF 540 TVEIFRRFQD EVSAMTSCFG ITQVHSNGSA SSYVVKEREG EKVRDFEVIY ETSAEAQVRC 600 FCVCGGFSFN GYQCRHVLLL LSHNGLQEVP PQYILQRWRK DVKRLYVADF GSGCVDIMNQ 660 DQWYEHLHRR AMQVVEQGMR SKEHCRVAWE ALQSCLESI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa09g095030.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC009322 | 0.0 | AC009322.1 Arabidopsis thaliana chromosome I BAC F18B13 genomic sequence, complete sequence. | |||
GenBank | AC011717 | 0.0 | AC011717.6 Arabidopsis thaliana chromosome 1 BAC F19K16 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010430027.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 8-like isoform X3 | ||||
Swissprot | Q9S793 | 0.0 | FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8 | ||||
TrEMBL | R0GD24 | 0.0 | R0GD24_9BRAS; Uncharacterized protein | ||||
STRING | XP_010430023.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14233 | 20 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80010.1 | 0.0 | FAR1-related sequence 8 |
Publications ? help Back to Top | |||
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