PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa09g095030.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

FAR1

Protein Properties

Length: 700aa MW: 79675 Da PI: 6.0279

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g095030.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.4	2.8e-24	93	179	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Yn+YA+e+GF +r+++s ++++++e + ++C++eg++ ++ + +++++r+etrtgC+a++++k+ + ++w++++++l+HnH++ Csa09g095030.1 93 YYNSYARELGFAIRIKSSWTKRNSKEKRGAVLCCNCEGFKMVKEAN--TTSTRRKETRTGCQAMIRLKLIEFDRWKIDQVKLDHNHSFD 179 9**************************************99888..8889999*****************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-21	93	179	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-26	303	397	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.951	586	625	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.1E-6	596	623	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.8E-5	600	627	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 700 aa Download sequence Send to blast
MIGDSVYSPS DQSLSSPNPN LCITMEEEQM VVEQEEEEEE LPLPDLGIDL DEDDCDGLLQ 60 IETGIDDDGP IAHSAPAPAP GMEFDSYDDA YSYYNSYARE LGFAIRIKSS WTKRNSKEKR 120 GAVLCCNCEG FKMVKEANTT STRRKETRTG CQAMIRLKLI EFDRWKIDQV KLDHNHSFDP 180 ERAHNSKSHK TTKSSSASAN TKQPQQPPLH VQVRTINLYR ALAVPHGTSS SSTSSPGGDH 240 SLSSSRPLLP PGGFSFLQDF FLRIQLTSPN FLYLMDLSDD GSLRNVFWID PRARAAYSHF 300 GDVVLFDTTC LSNSYQLPLV SFVGIDHHGD SILLGCALLA HQTFETYLWL FRAWLTCMLG 360 RPPQTFITQQ CKAMRAAVSE VFPRAHHRLS LTHVLHNIFQ SVVQLQDSEL FRMALNRVVY 420 GCLKVEEFET AWEEMIIRFG LTNHETINHL FQDRELWAPV YLKDTFLAGA LTFRLGDVAA 480 PFIFSGYVHE HTSLREFLEG YQSFLDKKYT RQALCDSESS KFIPELKTTH PYESQMAKVF 540 TVEIFRRFQD EVSAMTSCFG ITQVHSNGSA SSYVVKEREG EKVRDFEVIY ETSAEAQVRC 600 FCVCGGFSFN GYQCRHVLLL LSHNGLQEVP PQYILQRWRK DVKRLYVADF GSGCVDIMNQ 660 DQWYEHLHRR AMQVVEQGMR SKEHCRVAWE ALQSCLESI*

Sequence ? help Back to Top

Protein Sequence Length: 700 aa Download sequence Send to blast

MIGDSVYSPS DQSLSSPNPN LCITMEEEQM VVEQEEEEEE LPLPDLGIDL DEDDCDGLLQ  60
IETGIDDDGP IAHSAPAPAP GMEFDSYDDA YSYYNSYARE LGFAIRIKSS WTKRNSKEKR  120
GAVLCCNCEG FKMVKEANTT STRRKETRTG CQAMIRLKLI EFDRWKIDQV KLDHNHSFDP  180
ERAHNSKSHK TTKSSSASAN TKQPQQPPLH VQVRTINLYR ALAVPHGTSS SSTSSPGGDH  240
SLSSSRPLLP PGGFSFLQDF FLRIQLTSPN FLYLMDLSDD GSLRNVFWID PRARAAYSHF  300
GDVVLFDTTC LSNSYQLPLV SFVGIDHHGD SILLGCALLA HQTFETYLWL FRAWLTCMLG  360
RPPQTFITQQ CKAMRAAVSE VFPRAHHRLS LTHVLHNIFQ SVVQLQDSEL FRMALNRVVY  420
GCLKVEEFET AWEEMIIRFG LTNHETINHL FQDRELWAPV YLKDTFLAGA LTFRLGDVAA  480
PFIFSGYVHE HTSLREFLEG YQSFLDKKYT RQALCDSESS KFIPELKTTH PYESQMAKVF  540
TVEIFRRFQD EVSAMTSCFG ITQVHSNGSA SSYVVKEREG EKVRDFEVIY ETSAEAQVRC  600
FCVCGGFSFN GYQCRHVLLL LSHNGLQEVP PQYILQRWRK DVKRLYVADF GSGCVDIMNQ  660
DQWYEHLHRR AMQVVEQGMR SKEHCRVAWE ALQSCLESI*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g095030.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC009322	0.0	AC009322.1 Arabidopsis thaliana chromosome I BAC F18B13 genomic sequence, complete sequence.
GenBank	AC011717	0.0	AC011717.6 Arabidopsis thaliana chromosome 1 BAC F19K16 genomic sequence, complete sequence.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010430027.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 8-like isoform X3
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	R0GD24	0.0	R0GD24_9BRAS; Uncharacterized protein
STRING	XP_010430023.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14233	20	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]