PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g084870.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 352aa    MW: 38221.6 Da    PI: 7.4024
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g084870.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2651.5e-20164213255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Csa09g084870.1 164 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 213
                     59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.28E-33163223No hitNo description
PROSITE profilePS5103223.169164221IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-23164222IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.6E-32164222IPR001471AP2/ERF domain
SMARTSM003801.0E-37164227IPR001471AP2/ERF domain
PfamPF008472.4E-14165213IPR001471AP2/ERF domain
PRINTSPR003673.3E-11165176IPR001471AP2/ERF domain
PRINTSPR003673.3E-11187203IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MAAAMNLYSS SRTFQDSFGG ELMDALVPFI KSVSDDSPTP SSSSSSAFLH PAASSASAFS  60
LPPFPGYYPV HEDSSFLTQP FSYGSDLLLQ QTGSSSSSSL IGLNNLSSSQ IHQIQSQIHH  120
PTHHTNTFSN LLSPKPLMMK QSGVAGSCFA YGSGGVLPPK PTKLYRGVRQ RHWGKWVAEI  180
RLPRNRTRLW LGTFDTAEEA ALAYDKAAYK LRGDFARLNF PNLRHNGSHI GGDFGEYKPL  240
HSSVDAKLEA ICKSMAETQK QDKSTTKSSS KKRGSSVKPE KVVSLSPSEK VKSEEKSPSI  300
AGSPPFEESA AGSSPLSDLT FADPEEPPQW NETFSLEKYP SYEIDWDSIL A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A6e-21163221160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g084870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0092431e-168AC009243.3 Genomic sequence for Arabidopsis thaliana BAC F28K19 from chromosome I, complete sequence.
GenBankAY1504681e-168AY150468.1 Arabidopsis thaliana putative AP2 domain containing protein (At1g78080) mRNA, complete cds.
GenBankCP0026841e-168CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010428923.10.0PREDICTED: ethylene-responsive transcription factor RAP2-4-like
SwissprotQ8H1E40.0RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLR0IB560.0R0IB56_9BRAS; Uncharacterized protein
STRINGXP_010428923.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27162670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-117related to AP2 4
Publications ? help Back to Top
  1. Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM
    XcisClique: analysis of regulatory bicliques.
    BMC Bioinformatics, 2006. 7: p. 218
    [PMID:16630346]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Iwase A, et al.
    WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed.
    J. Plant Res., 2015. 128(3): p. 389-97
    [PMID:25810222]
  4. Ikeuchi M, et al.
    PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis.
    Nat Plants, 2015. 1: p. 15089
    [PMID:27250255]
  5. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]