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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa09g011750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | TCP | ||||||||
Protein Properties | Length: 335aa MW: 35309.7 Da PI: 7.0934 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 126 | 4.1e-39 | 78 | 164 | 3 | 88 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 +k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tg+++++as+ +a++s+s++++++ + Csa09g011750.1 78 PKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALaSAAASVSNHHHQGGS 164 6999****************************************************************9996666666666655544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.6E-30 | 82 | 262 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.016 | 83 | 137 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MDPKNLNRHQ VPNFLNPSSH PPPPLNQGIG DNDDNDDNRK STEIKDFQIV VSASSDKEPN 60 TNNNTTIKKS QNQTQLGPKR SSNKDRHTKV EGRGRRIRMP ALCAARIFQL TRELGHKSDG 120 ETIQWLLQQA EPSIIAATGS GTIPASALAS AAASVSNHHH QGGSLTAGLM ISHDLVDGGG 180 SSSGRPPNWG IGGGEGASSR SNLPTGLWPN VAGFGSGVPT TGLMSEGAGY RIGFPGFDFP 240 GVGPMSFASI LGGAGGNNHQ MPGLELGLSQ EGNVGVLNPQ SFNQIYQQMS QAQVQAQAQA 300 QAQGRVLHHI HHNHEDHQQE SGEKDDSQSQ GSGR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa09g011750.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB026649 | 0.0 | AB026649.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MOJ10. | |||
GenBank | AJ291749 | 0.0 | AJ291749.1 Arabidopsis thaliana mRNA for putative transcription factor (PCF1 gene). | |||
GenBank | AK118178 | 0.0 | AK118178.1 Arabidopsis thaliana At3g27010 mRNA for unknown protein, complete cds, clone: RAFL19-49-P20. | |||
GenBank | BT006043 | 0.0 | BT006043.1 Arabidopsis thaliana clone U50934 unknown protein (At3g27010) mRNA, complete cds. | |||
GenBank | CP002686 | 0.0 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010425437.1 | 0.0 | PREDICTED: transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 1e-157 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | R0HDZ9 | 0.0 | R0HDZ9_9BRAS; Uncharacterized protein | ||||
STRING | XP_010425437.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4050 | 27 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 1e-132 | TCP family protein |