PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa08g028090.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB_related

Protein Properties

Length: 967aa MW: 107982 Da PI: 9.2434

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa08g028090.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22	3.8e-07	45	81	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 WT+ E e+++da +++ g+ Wk++a+ + ++R+ +++ Csa08g028090.1 45 QWTKGELERFYDAYRKHVGD-WKKVAAAVRNNRSVEMV 81 6***************99.*******99998765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.74E-5	44	89	IPR009057	Homeodomain-like
CDD	cd00167	0.00499	46	81	No hit	No description
Pfam	PF06584	1.2E-29	553	653	IPR033471	DIRP domain
SMART	SM01135	3.2E-49	553	654	IPR033471	DIRP domain
SMART	SM00333	0.0022	640	697	IPR002999	Tudor domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 967 aa Download sequence Send to blast
MAPSRKLKSV NKRFISEASP DINNVGSSTK TKQRKKKLTD KLGPQWTKGE LERFYDAYRK 60 HVGDWKKVAA AVRNNRSVEM VEALFSMNRA YLSLPEGTAS VAGLIAMMTD HYSVMEGSES 120 EGEDHDASGV LRKNQKRKRA KVQASDFQEE VIPPHSIASA EGCLSHLKHT QAYEKRQRAT 180 GKRTPRVLVA ITCERNNREY STPPNKRAKK QLDANDDASR RGGGSPYRRT ELSDSTPLRL 240 GKRLQAQEAQ FKHHDSSMFE NSVRISRDKR HKKGAADRDS ALLMDIEGLV SAEVPQKGKN 300 VRVEEAEGSD DDGLEALKEL ADVSVALAPT GLMESESSAQ REEERIANNV DEQSNTLETV 360 STSHHREKEK QAGPEDSLLH AISAADKSKP KSVQESVDVG TSRRKRKTKV LDAEALEESI 420 QIKSLDTKES AEDDNLKTLV RARRSGQGPV NQLKTAKTSE ESASTSDKKI TGPDAVVTAT 480 QVSGSGPVTL PQKPPNRRKM SLKKILQQRV SSETTHDKPL SCKKFSEYEL LKEKVSTCLS 540 YPLVRRWCIF EWFYSAIDYP WFAKMEFTDY LNHVGLGHVP RLTRLEWSVI KSSLGRPRRF 600 SERFLQDERD KLQQYRESVR KHYTEVRGCA REVLHTDLAR PLSVGNRVIA IHPKTREIRD 660 GKILTVDHNK CNVLFDESGV ELVMDIDCMP LNPLEYMPEG LRKQIDKCLS ISKEAQPNRH 720 SNSDASVLFS PSVLENVNFS MNPPSKQDDI RKSVLFDKVL ATNTTDQSVT TNSQKRGTEI 780 QRPLTLQRTS DAQEMEPEMI EIVSGSKTIA QAMVDAAMKA ALSGKNNNNN EEAGNMVQQA 840 LSSIGKHQPL DNSIVSSGIK HQQHTNGSLD HHPSNTAEPI NGLASQDGSG KNKMQIPSEL 900 ITSCVATWLM IQMCTEKHYP PADVAQLMET AVSGLQPRCP QNMPIYREIQ TCMGWIKTQI 960 MALVRT*

Sequence ? help Back to Top

Protein Sequence Length: 967 aa Download sequence Send to blast

MAPSRKLKSV NKRFISEASP DINNVGSSTK TKQRKKKLTD KLGPQWTKGE LERFYDAYRK  60
HVGDWKKVAA AVRNNRSVEM VEALFSMNRA YLSLPEGTAS VAGLIAMMTD HYSVMEGSES  120
EGEDHDASGV LRKNQKRKRA KVQASDFQEE VIPPHSIASA EGCLSHLKHT QAYEKRQRAT  180
GKRTPRVLVA ITCERNNREY STPPNKRAKK QLDANDDASR RGGGSPYRRT ELSDSTPLRL  240
GKRLQAQEAQ FKHHDSSMFE NSVRISRDKR HKKGAADRDS ALLMDIEGLV SAEVPQKGKN  300
VRVEEAEGSD DDGLEALKEL ADVSVALAPT GLMESESSAQ REEERIANNV DEQSNTLETV  360
STSHHREKEK QAGPEDSLLH AISAADKSKP KSVQESVDVG TSRRKRKTKV LDAEALEESI  420
QIKSLDTKES AEDDNLKTLV RARRSGQGPV NQLKTAKTSE ESASTSDKKI TGPDAVVTAT  480
QVSGSGPVTL PQKPPNRRKM SLKKILQQRV SSETTHDKPL SCKKFSEYEL LKEKVSTCLS  540
YPLVRRWCIF EWFYSAIDYP WFAKMEFTDY LNHVGLGHVP RLTRLEWSVI KSSLGRPRRF  600
SERFLQDERD KLQQYRESVR KHYTEVRGCA REVLHTDLAR PLSVGNRVIA IHPKTREIRD  660
GKILTVDHNK CNVLFDESGV ELVMDIDCMP LNPLEYMPEG LRKQIDKCLS ISKEAQPNRH  720
SNSDASVLFS PSVLENVNFS MNPPSKQDDI RKSVLFDKVL ATNTTDQSVT TNSQKRGTEI  780
QRPLTLQRTS DAQEMEPEMI EIVSGSKTIA QAMVDAAMKA ALSGKNNNNN EEAGNMVQQA  840
LSSIGKHQPL DNSIVSSGIK HQQHTNGSLD HHPSNTAEPI NGLASQDGSG KNKMQIPSEL  900
ITSCVATWLM IQMCTEKHYP PADVAQLMET AVSGLQPRCP QNMPIYREIQ TCMGWIKTQI  960
MALVRT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa08g028090.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493764	0.0	AB493764.1 Arabidopsis thaliana At5g27610 mRNA for hypothetical protein, partial cds, clone: RAAt5g27610.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010421595.1	0.0	PREDICTED: protein ALWAYS EARLY 1-like
Refseq	XP_019083977.1	0.0	PREDICTED: protein ALWAYS EARLY 1-like
Swissprot	Q6A331	0.0	ALY1_ARATH; Protein ALWAYS EARLY 1
TrEMBL	R0FCS2	0.0	R0FCS2_9BRAS; Uncharacterized protein
STRING	XP_010421595.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2962	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	7e-73	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]