PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa07g059860.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

FAR1

Protein Properties

Length: 681aa MW: 77850 Da PI: 5.8655

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa07g059860.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	78.5	1.3e-24	74	161	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Yn+YA+e+GF +r+++s ++++++e + ++C++eg++ ++ + +++ ++r+etrtgC+a++++k+ + ++w+v++++l+HnH++ Csa07g059860.1 74 YYNSYARELGFAIRIKSSWTKRNSKEKRGAVLCCNCEGFKMVKEAN-TTTTSRRKETRTGCQAMIRLKLIDFDRWKVDQVKLDHNHSFD 161 9***************************************9999.899999*******************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.6E-22	74	161	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.3E-26	284	378	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.951	567	606	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.0E-6	577	604	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.8E-5	581	608	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence Send to blast
MEEEQMVVEG EEEEEEEEEL PLPIDDPADL GIDLEDDCDG LLQIETGIDE DAPIAHSAPA 60 PGMEFESYDD AYSYYNSYAR ELGFAIRIKS SWTKRNSKEK RGAVLCCNCE GFKMVKEANT 120 TTTSRRKETR TGCQAMIRLK LIDFDRWKVD QVKLDHNHSF DPERAHNSKS HKTSSASANT 180 KLQQQPPLHV QVRTINLYRA LAVPHGTSCS SSYSSTSPGG DHSLSSRPLL PPGGFSFLQD 240 FFFRIQLTSP NFLYLMDLTD DGSLRNVFWI DPRARAAYSH FGDVVLFDTT CLSNSYQLPL 300 VSFVGIDHHG DSILLGCALL AHQTFETYLW LFRAWLTCML GRPPQTFITQ QCKAMRAAVS 360 EVFPRAHHRL SLTHVLHNIF QSVVQLQDSE LFRMALNRVV YGCLKVEEFE TAWEEMIIRF 420 GLTNHETIHH VFQDRELWAP VYLKDTFLAG ALTFRLGDVA APFIFSGYVH EHTSLREFLE 480 GYQSFLDKKY TRQALCDSES SKFIPELKTT HPYESQMAKV FTVEIFRRFQ DEVSAMTSCF 540 GITQVHSNGS ASSYVVKERE GEKVRDFEVI YETSAEAQVR CFCVCGGFSF NGYQCRHVLL 600 LLSHNGLQEV PPQYILQRWR KDVKRLYVAD FGSGCVDIMN QDQWYEHLHR RAMQVVEQGM 660 RSKEHCRVAW EALQSCLESI *

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence Send to blast

MEEEQMVVEG EEEEEEEEEL PLPIDDPADL GIDLEDDCDG LLQIETGIDE DAPIAHSAPA  60
PGMEFESYDD AYSYYNSYAR ELGFAIRIKS SWTKRNSKEK RGAVLCCNCE GFKMVKEANT  120
TTTSRRKETR TGCQAMIRLK LIDFDRWKVD QVKLDHNHSF DPERAHNSKS HKTSSASANT  180
KLQQQPPLHV QVRTINLYRA LAVPHGTSCS SSYSSTSPGG DHSLSSRPLL PPGGFSFLQD  240
FFFRIQLTSP NFLYLMDLTD DGSLRNVFWI DPRARAAYSH FGDVVLFDTT CLSNSYQLPL  300
VSFVGIDHHG DSILLGCALL AHQTFETYLW LFRAWLTCML GRPPQTFITQ QCKAMRAAVS  360
EVFPRAHHRL SLTHVLHNIF QSVVQLQDSE LFRMALNRVV YGCLKVEEFE TAWEEMIIRF  420
GLTNHETIHH VFQDRELWAP VYLKDTFLAG ALTFRLGDVA APFIFSGYVH EHTSLREFLE  480
GYQSFLDKKY TRQALCDSES SKFIPELKTT HPYESQMAKV FTVEIFRRFQ DEVSAMTSCF  540
GITQVHSNGS ASSYVVKERE GEKVRDFEVI YETSAEAQVR CFCVCGGFSF NGYQCRHVLL  600
LLSHNGLQEV PPQYILQRWR KDVKRLYVAD FGSGCVDIMN QDQWYEHLHR RAMQVVEQGM  660
RSKEHCRVAW EALQSCLESI *

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa07g059860.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC009322	0.0	AC009322.1 Arabidopsis thaliana chromosome I BAC F18B13 genomic sequence, complete sequence.
GenBank	AC011717	0.0	AC011717.6 Arabidopsis thaliana chromosome 1 BAC F19K16 genomic sequence, complete sequence.
GenBank	CP002684	0.0	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010417761.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 8-like isoform X2
Swissprot	Q9S793	0.0	FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8
TrEMBL	R0GD24	0.0	R0GD24_9BRAS; Uncharacterized protein
STRING	XP_010417761.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14233	20	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1-related sequence 8

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]