PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa07g059860.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | FAR1 | ||||||||
Protein Properties | Length: 681aa MW: 77850 Da PI: 5.8655 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 78.5 | 1.3e-24 | 74 | 161 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Yn+YA+e+GF +r+++s ++++++e + ++C++eg++ ++ + +++ ++r+etrtgC+a++++k+ + ++w+v++++l+HnH++ Csa07g059860.1 74 YYNSYARELGFAIRIKSSWTKRNSKEKRGAVLCCNCEGFKMVKEAN-TTTTSRRKETRTGCQAMIRLKLIDFDRWKVDQVKLDHNHSFD 161 9*****************************************9999.899999*********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.6E-22 | 74 | 161 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.3E-26 | 284 | 378 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 8.951 | 567 | 606 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 3.0E-6 | 577 | 604 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 4.8E-5 | 581 | 608 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 681 aa Download sequence Send to blast |
MEEEQMVVEG EEEEEEEEEL PLPIDDPADL GIDLEDDCDG LLQIETGIDE DAPIAHSAPA 60 PGMEFESYDD AYSYYNSYAR ELGFAIRIKS SWTKRNSKEK RGAVLCCNCE GFKMVKEANT 120 TTTSRRKETR TGCQAMIRLK LIDFDRWKVD QVKLDHNHSF DPERAHNSKS HKTSSASANT 180 KLQQQPPLHV QVRTINLYRA LAVPHGTSCS SSYSSTSPGG DHSLSSRPLL PPGGFSFLQD 240 FFFRIQLTSP NFLYLMDLTD DGSLRNVFWI DPRARAAYSH FGDVVLFDTT CLSNSYQLPL 300 VSFVGIDHHG DSILLGCALL AHQTFETYLW LFRAWLTCML GRPPQTFITQ QCKAMRAAVS 360 EVFPRAHHRL SLTHVLHNIF QSVVQLQDSE LFRMALNRVV YGCLKVEEFE TAWEEMIIRF 420 GLTNHETIHH VFQDRELWAP VYLKDTFLAG ALTFRLGDVA APFIFSGYVH EHTSLREFLE 480 GYQSFLDKKY TRQALCDSES SKFIPELKTT HPYESQMAKV FTVEIFRRFQ DEVSAMTSCF 540 GITQVHSNGS ASSYVVKERE GEKVRDFEVI YETSAEAQVR CFCVCGGFSF NGYQCRHVLL 600 LLSHNGLQEV PPQYILQRWR KDVKRLYVAD FGSGCVDIMN QDQWYEHLHR RAMQVVEQGM 660 RSKEHCRVAW EALQSCLESI * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa07g059860.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC009322 | 0.0 | AC009322.1 Arabidopsis thaliana chromosome I BAC F18B13 genomic sequence, complete sequence. | |||
GenBank | AC011717 | 0.0 | AC011717.6 Arabidopsis thaliana chromosome 1 BAC F19K16 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010417761.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 8-like isoform X2 | ||||
Swissprot | Q9S793 | 0.0 | FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8 | ||||
TrEMBL | R0GD24 | 0.0 | R0GD24_9BRAS; Uncharacterized protein | ||||
STRING | XP_010417761.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14233 | 20 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80010.1 | 0.0 | FAR1-related sequence 8 |
Publications ? help Back to Top | |||
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