PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa07g056680.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

GeBP

Protein Properties

Length: 192aa MW: 21826.2 Da PI: 4.4363

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa07g056680.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	92	6.6e-29	9	93	14	98
DUF573 14 vlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 ++LqGl+d++aktg +++ d+dafy+f+ +si k+sk+q++ K+r+LKk+f + +k+++g++p+f++++d+++f++s++iWg+ Csa07g056680.1 9 LVLQGLVDYRAKTGFQSKIDWDAFYRFLGSSIAEKYSKEQVLGKVRKLKKRFLVHLEKINQGSDPKFTRSSDSEAFGFSMMIWGQ 93 69*********************************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.4E-20	10	92	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MIPETLNFLV LQGLVDYRAK TGFQSKIDWD AFYRFLGSSI AEKYSKEQVL GKVRKLKKRF 60 LVHLEKINQG SDPKFTRSSD SEAFGFSMMI WGQNEAEEVV HDDDDDYGMD KEMLKDQEEP 120 LNGEDMLKEH EDVANTERLN ENGAAKIREN GTTAGKESHD NDDDELCAVR DAFETVMSQG 180 LSGYQKKLQL E*

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein, which specifically recognizes the GL1 enhancer sequence (PubMed:12535344). May be involved in leaf initiation (PubMed:12535344). May play redundant roles with GPL1 and GPL2 in cytokinin responses by regulating the transcript levels of type-A ARR response genes (PubMed:18162594). Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). May play a role in plant defense (PubMed:29192025). {ECO:0000269\|PubMed:12535344, ECO:0000269\|PubMed:21875893, ECO:0000269\|PubMed:29192025, ECO:0000305\|PubMed:18162594}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa07g056680.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by KNAT1. Not regulated by gibberellins. {ECO:0000269\|PubMed:12535344}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019083499.1	1e-132	PREDICTED: GLABROUS1 enhancer-binding protein-like 1
Swissprot	Q9ASZ1	6e-72	STKLO_ARATH; GLABROUS1 enhancer-binding protein
TrEMBL	R0G0S3	8e-88	R0G0S3_9BRAS; Uncharacterized protein
STRING	XP_010472575.1	1e-110	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6117	17	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00270.1	4e-73	DNA-binding storekeeper protein-related transcriptional regulator

Publications ? help Back to Top
Nietzsche M,Schießl I,Börnke F The complex becomes more complex: protein-protein interactions of SnRK1 with DUF581 family proteins provide a framework for cell- and stimulus type-specific SnRK1 signaling in plants. Front Plant Sci, 2014. 5: p. 54 [PMID:24600465] Nietzsche M, et al. STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1. Plant Physiol., 2018. 176(2): p. 1773-1792 [PMID:29192025]