PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa07g056680.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | GeBP | ||||||||
Protein Properties | Length: 192aa MW: 21826.2 Da PI: 4.4363 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 92 | 6.6e-29 | 9 | 93 | 14 | 98 |
DUF573 14 vlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWgs 98 ++LqGl+d++aktg +++ d+dafy+f+ +si k+sk+q++ K+r+LKk+f + +k+++g++p+f++++d+++f++s++iWg+ Csa07g056680.1 9 LVLQGLVDYRAKTGFQSKIDWDAFYRFLGSSIAEKYSKEQVLGKVRKLKKRFLVHLEKINQGSDPKFTRSSDSEAFGFSMMIWGQ 93 69*********************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.4E-20 | 10 | 92 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MIPETLNFLV LQGLVDYRAK TGFQSKIDWD AFYRFLGSSI AEKYSKEQVL GKVRKLKKRF 60 LVHLEKINQG SDPKFTRSSD SEAFGFSMMI WGQNEAEEVV HDDDDDYGMD KEMLKDQEEP 120 LNGEDMLKEH EDVANTERLN ENGAAKIREN GTTAGKESHD NDDDELCAVR DAFETVMSQG 180 LSGYQKKLQL E* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein, which specifically recognizes the GL1 enhancer sequence (PubMed:12535344). May be involved in leaf initiation (PubMed:12535344). May play redundant roles with GPL1 and GPL2 in cytokinin responses by regulating the transcript levels of type-A ARR response genes (PubMed:18162594). Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). May play a role in plant defense (PubMed:29192025). {ECO:0000269|PubMed:12535344, ECO:0000269|PubMed:21875893, ECO:0000269|PubMed:29192025, ECO:0000305|PubMed:18162594}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa07g056680.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by KNAT1. Not regulated by gibberellins. {ECO:0000269|PubMed:12535344}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019083499.1 | 1e-132 | PREDICTED: GLABROUS1 enhancer-binding protein-like 1 | ||||
Swissprot | Q9ASZ1 | 6e-72 | STKLO_ARATH; GLABROUS1 enhancer-binding protein | ||||
TrEMBL | R0G0S3 | 8e-88 | R0G0S3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010472575.1 | 1e-110 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6117 | 17 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00270.1 | 4e-73 | DNA-binding storekeeper protein-related transcriptional regulator |
Publications ? help Back to Top | |||
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