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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa07g035800.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 300aa MW: 35606.7 Da PI: 9.8292 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 96.7 | 9.6e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+++fs++gkl+eys+ Csa07g035800.1 9 KRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYST 59 79***********************************************96 PP | |||||||
2 | K-box | 93.5 | 3.6e-31 | 79 | 159 | 5 | 85 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 + + e+ + +++ e+++Lk++ie L+r+qRh+lGedL+ +s keLq+LeqqL+++lk+iRs+Kn+l++e+i+elq+k Csa07g035800.1 79 QLIAPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSPKELQHLEQQLDTALKHIRSRKNQLMYESINELQRKVC 159 555556666889******************************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.8E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.184 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 8.63E-34 | 2 | 88 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.84E-42 | 2 | 79 | No hit | No description |
PRINTS | PR00404 | 1.2E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.6E-26 | 85 | 158 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.562 | 88 | 183 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVALVVFSH KGKLFEYSTD 60 SCMEKILERY ERYSYAERQL IAPESDVNTN WSMEYNRLKA KIELLERNQR HYLGEDLQAM 120 SPKELQHLEQ QLDTALKHIR SRKNQLMYES INELQRKVCK NSIQCMSDRE TTRKKRIGKF 180 NNRAVSEMYR RRPYRNKTAC FPNRTWFVKP ENWQIKEREK ILRAQQEQWD QQNHGHNMPP 240 PPPPQQHQIQ HPYMLSHQPS PFLNMGGLYQ EEDPMAMRRN DLDLTLEPVY NCNLGCFAA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 3e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_B | 3e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_C | 3e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6byy_D | 3e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_A | 3e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_B | 3e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_C | 3e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
6bz1_D | 3e-21 | 1 | 74 | 1 | 73 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa07g035800.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY087956 | 0.0 | AY087956.1 Arabidopsis thaliana clone 39890 mRNA, complete sequence. | |||
GenBank | Z16421 | 0.0 | Z16421.1 A.thaliana mRNA for AP1 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009105460.1 | 1e-161 | PREDICTED: floral homeotic protein APETALA 1 | ||||
Refseq | XP_013652316.1 | 1e-161 | floral homeotic protein APETALA 1 | ||||
Swissprot | P0DI14 | 1e-162 | AP1_BRARP; Floral homeotic protein APETALA 1 | ||||
TrEMBL | A0A0C5PW81 | 1e-162 | A0A0C5PW81_LEPSV; Apetala 1 | ||||
STRING | Bostr.10273s0459.1.p | 1e-164 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM792 | 25 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69120.1 | 1e-144 | MIKC_MADS family protein |