PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g085820.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MIKC_MADS
Protein Properties Length: 266aa    MW: 31110.5 Da    PI: 8.5799
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g085820.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF977.9e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krienk+nrqvtfskRr+g+lKKA+E+SvLCdaeva+++fs++gkl+eys+
  Csa05g085820.1  9 KRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALVVFSHKGKLFEYST 59
                    79***********************************************96 PP
2K-box91.31.7e-30791835100
           K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK.........nellleqieelqkkekelqee 90 
                     +  + e+  + +++ e+++Lk++ie L+r+qRh+lGedL+ +s keLq+LeqqL+++lk+iRs+K         n+l++e+i+elq+kek++qe+
  Csa05g085820.1  79 QLIAPESDVNTNWSMEYNRLKAKIELLERNQRHYLGEDLQAMSPKELQNLEQQLDTALKHIRSRKvlpspislnNQLMYESINELQRKEKAIQEQ 173
                     555556666889****************************************************98888888888******************** PP

           K-box  91 nkaLrkklee 100
                     n +L+k+++e
  Csa05g085820.1 174 NSMLSKQIKE 183
                     *******987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.8E-40160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.184161IPR002100Transcription factor, MADS-box
CDDcd002651.25E-42279No hitNo description
SuperFamilySSF554556.8E-34289IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-31323IPR002100Transcription factor, MADS-box
PfamPF003199.8E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004049.2E-313859IPR002100Transcription factor, MADS-box
PfamPF014861.1E-2885181IPR002487Transcription factor, K-box
PROSITE profilePS5129715.17288187IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MGRGRVQLKR IENKINRQVT FSKRRAGLLK KAHEISVLCD AEVALVVFSH KGKLFEYSTD  60
SCMEKILERY ERYSYAERQL IAPESDVNTN WSMEYNRLKA KIELLERNQR HYLGEDLQAM  120
SPKELQNLEQ QLDTALKHIR SRKVLPSPIS LNNQLMYESI NELQRKEKAI QEQNSMLSKQ  180
IKEREKILRA QQEQWDQQNH GHNMPPPPPP QQHQIQHPYM LSHQPSPFLN MGGLYQEEDP  240
MAMRRNDLDL TLEPVYNCNL GCFAA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A7e-22174173MEF2 CHIMERA
6byy_B7e-22174173MEF2 CHIMERA
6byy_C7e-22174173MEF2 CHIMERA
6byy_D7e-22174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes early floral meristem identity in synergy with LEAFY. Displays a redundant function with CAULIFLOWER in the up-regulation of LEAFY. Required subsequently for the transition of an inflorescence meristem into a floral meristem, and for the normal development of sepals and petals in flowers. Regulates positively B class homeotic proteins (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g085820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0879560.0AY087956.1 Arabidopsis thaliana clone 39890 mRNA, complete sequence.
GenBankZ164210.0Z16421.1 A.thaliana mRNA for AP1 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009105460.11e-178PREDICTED: floral homeotic protein APETALA 1
RefseqXP_013652316.11e-178floral homeotic protein APETALA 1
SwissprotP0DI141e-179AP1_BRARP; Floral homeotic protein APETALA 1
TrEMBLA0A0C5PW811e-179A0A0C5PW81_LEPSV; Apetala 1
STRINGBostr.10273s0459.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79225110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-162MIKC_MADS family protein