PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa04g008330.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 483aa    MW: 54492.2 Da    PI: 6.5848
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa04g008330.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.91.3e-143175348
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      WT+eEd++l + +  +G+++W+ Ia++++  ++  qc+ rw++yl
   Csa04g008330.1 31 TWTPEEDDILRKHISVHGTENWAIIASKFN-DKSTRQCRRRWYTYL 75
                     6*****************************.*************97 PP
2Myb_DNA-binding44.73.1e-1481124146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg W++eEd ll +a +++G++ W+ Ia+ +  gRt++ +k+r+ +
   Csa04g008330.1  81 RGGWSPEEDTLLCEAQRLFGNR-WTEIAKVVS-GRTDNAVKNRFTT 124
                      789*******************.*********.**********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.5842475IPR017930Myb domain
SMARTSM007175.8E-142877IPR001005SANT/Myb domain
SuperFamilySSF466895.24E-2628122IPR009057Homeodomain-like
CDDcd001671.48E-133175No hitNo description
PfamPF139217.2E-173292No hitNo description
Gene3DG3DSA:1.10.10.604.2E-213282IPR009057Homeodomain-like
PROSITE profilePS5129420.81276130IPR017930Myb domain
SMARTSM007178.4E-1580128IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-1983129IPR009057Homeodomain-like
CDDcd001678.36E-1184125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MEETTKQNNK NKKKIVVTTD DSKKKERHIV TWTPEEDDIL RKHISVHGTE NWAIIASKFN  60
DKSTRQCRRR WYTYLNSDFK RGGWSPEEDT LLCEAQRLFG NRWTEIAKVV SGRTDNAVKN  120
RFTTLCKKRA KYEAMAKENK IACCVNSNNK RLLFPDGIST PRKVESESPL TKKMRRSHIP  180
DRTEIKSYGD RSHIKVESAM NQQTRPPLSV VSHNTAGIDG MKEQKLTCNA KVCDGEDKGT  240
QEVFLKKDDP KVTALIEQAE LLSSLAQKVN ADNTDQSMEN AWKVLQDFLN KSKENDLFRY  300
GIPDIDFQLE EFKGLDEDLR ISNEDSQTSW RQPDLHDSPA SSEYSSGSTV MPPHPCGDKT  360
HQPVSDTQTT SSQKQNDGQL PQAEEIVPDV ITVEHVDLLT TCQDVLKNPN EIVPMSGDEE  420
FHSPVQVTPF FRSLAAGIPS PQFSESERNF LLKTLGVESP CPCPSANPSQ PPPCKRVLLD  480
SL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-243213010108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to DNA in promoters cis-regulatory element 5'-GGCGCGC-3' of cell cycle genes, including cyclins, cyclin-dependent kinases (CDKs), and components of the pre-replication complex (PubMed:20675570, PubMed:24687979). Binds to DNA in promoters cis-regulatory element 5'-AGCCG-3' of auxin regulated genes (e.g. PIN3 and PIN7) (PubMed:26578169). Together with FAMA and MYB124, ensures that stomata contain just two guard cells (GCs) by enforcing a single symmetric precursor cell division before stomatal maturity (PubMed:24571519). Represses the expression of the mitosis-inducing factors CDKB1-1 and CDKA-1, specifically required for the last guard mother cells (GMC) symmetric divisions in the stomatal pathway (PubMed:20675570, PubMed:24687979). Represses CYCA2-3 in newly formed guard cells (PubMed:21772250). Together with MYB88, regulates stomata spacing by restricting divisions late in the stomatal cell lineage thus limiting the number of GMC divisions (PubMed:16155180). In collaboration with CDKB1-1 and CDKB1-2, restrict the G1/S transition and chloroplast and nuclear number during stomatal formation, and normally maintain fate and developmental progression throughout the stomatal cell lineage (PubMed:24123248). Involved in sensing and/or transducing abiotic stress (e.g. drought and salt), probably via the positive regulation of NAC019 (PubMed:21105921). Regulates female reproduction being required for entry into megasporogenesis, probably via the regulation of cell cycle genes (PubMed:22915737). Plays a minor role in lateral roots (LRs) initiation (PubMed:26578065). Involved complementarily in establishing the gravitropic set-point angles of lateral roots by regulating the transcription of PIN3 and PIN7 in gravity-sensing cells of primary and lateral roots (PubMed:26578169). {ECO:0000269|PubMed:16155180, ECO:0000269|PubMed:20675570, ECO:0000269|PubMed:21105921, ECO:0000269|PubMed:21772250, ECO:0000269|PubMed:22915737, ECO:0000269|PubMed:24123248, ECO:0000269|PubMed:24571519, ECO:0000269|PubMed:24687979, ECO:0000269|PubMed:26578065, ECO:0000269|PubMed:26578169}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa04g008330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2265750.0AK226575.1 Arabidopsis thaliana mRNA for hypothetical protein, clone: RAFL07-13-I18.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010502292.10.0PREDICTED: transcription factor MYB36-like isoform X2
RefseqXP_019100005.10.0PREDICTED: transcription factor MYB36-like isoform X1
SwissprotF4IRB40.0MYB88_ARATH; Transcription factor MYB88
TrEMBLR0H3R40.0R0H3R4_9BRAS; Uncharacterized protein
STRINGXP_010502292.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33742863
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02820.20.0myb domain protein 88
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yang K, et al.
    Requirement for A-type cyclin-dependent kinase and cyclins for the terminal division in the stomatal lineage of Arabidopsis.
    J. Exp. Bot., 2014. 65(9): p. 2449-61
    [PMID:24687979]
  4. Yang M
    The FOUR LIPS (FLP) and MYB88 genes conditionally suppress the production of nonstomatal epidermal cells in Arabidopsis cotyledons.
    Am. J. Bot., 2016. 103(9): p. 1559-66
    [PMID:27620181]
  5. Xu Z, et al.
    DGE-seq analysis of MUR3-related Arabidopsis mutants provides insight into how dysfunctional xyloglucan affects cell elongation.
    Plant Sci., 2017. 258: p. 156-169
    [PMID:28330559]
  6. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  7. Xie Y, et al.
    An atypical R2R3 MYB transcription factor increases cold hardiness by CBF-dependent and CBF-independent pathways in apple.
    New Phytol., 2018. 218(1): p. 201-218
    [PMID:29266327]