PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa03g047450.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bZIP

Protein Properties

Length: 421aa MW: 45032.5 Da PI: 9.6957

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa03g047450.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	46	1.2e-14	342	397	5	60
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 +r+rr++kNRe+A rsR+RK+a++ eLe +v++L++eN++L+ + ++ ++ ++ + Csa03g047450.1 342 RRQRRMIKNRESAARSRARKQAYTVELEAEVAKLKEENDELQRKQAKIMEMQKNQE 397 79***************************************999888888876655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.0E-13	338	402	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.346	340	403	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.4E-14	342	392	No hit	No description
SuperFamily	SSF57959	1.48E-10	342	391	No hit	No description
CDD	cd14707	1.27E-27	342	396	No hit	No description
Pfam	PF00170	3.3E-12	342	398	IPR004827	Basic-leucine zipper domain
PROSITE pattern	PS00036	0	345	360	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MDGNMNFKNN LGNEPPGEGG GALTRPGLTR QGSIYSLTFD EFQSSLGKDF GSMNMDELLK 60 NIWSAEETQA MASGMVPVAA GGQEGLQLQK QGSLTLPRTL SQMTVDQVWK DLSKVGNSGG 120 GGTNLSQPQA QAQNQSQSQS QRQRQQTLGE VTLEEFLVRA GVVREEAEIA ENIKAGYFGN 180 DANTGFSVGF QQPPPRVVAA GLVGAETANP LQVQGSSLPL NVNGARSTYQ QPQQQQPTIM 240 PKQPGFCYGT QIGQLNSPGI RGGGIMGFGD QSQTNNMGLV NGSAAAIPGA VGVGAVSPVT 300 PLSSEGIGKS NGDCSSLSPS PYMFNGGVRG RKSGTVEKVV ERRQRRMIKN RESAARSRAR 360 KQAYTVELEA EVAKLKEEND ELQRKQAKIM EMQKNQEMEL RNLVQGGPKK RLRRTESGPW 420 *

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MDGNMNFKNN LGNEPPGEGG GALTRPGLTR QGSIYSLTFD EFQSSLGKDF GSMNMDELLK  60
NIWSAEETQA MASGMVPVAA GGQEGLQLQK QGSLTLPRTL SQMTVDQVWK DLSKVGNSGG  120
GGTNLSQPQA QAQNQSQSQS QRQRQQTLGE VTLEEFLVRA GVVREEAEIA ENIKAGYFGN  180
DANTGFSVGF QQPPPRVVAA GLVGAETANP LQVQGSSLPL NVNGARSTYQ QPQQQQPTIM  240
PKQPGFCYGT QIGQLNSPGI RGGGIMGFGD QSQTNNMGLV NGSAAAIPGA VGVGAVSPVT  300
PLSSEGIGKS NGDCSSLSPS PYMFNGGVRG RKSGTVEKVV ERRQRRMIKN RESAARSRAR  360
KQAYTVELEA EVAKLKEEND ELQRKQAKIM EMQKNQEMEL RNLVQGGPKK RLRRTESGPW  420
*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa03g047450.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by drought, salt, abscisic acid (ABA), cold and glucose. {ECO:0000269\|PubMed:10636868, ECO:0000269\|PubMed:11005831, ECO:0000269\|PubMed:15361142, ECO:0000269\|PubMed:16284313, ECO:0000269\|PubMed:16463099}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB017160	0.0	AB017160.1 Arabidopsis thaliana mRNA for ABA-responsive element binding protein 1 (AREB1), complete cds.
GenBank	AF093545	0.0	AF093545.1 Arabidopsis thaliana clone 2 abscisic acid responsive elements-binding factor (ABRE) mRNA, complete cds.
GenBank	BT026443	0.0	BT026443.1 Arabidopsis thaliana At1g45249 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010500203.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5
Refseq	XP_010500204.1	0.0	PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 5
Swissprot	Q9M7Q4	0.0	AI5L5_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 5
TrEMBL	R0GWZ7	0.0	R0GWZ7_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010500203.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM734	27	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G45249.1	1e-176	abscisic acid responsive elements-binding factor 2

Publications ? help Back to Top
Gao S, et al. ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis. Mol Plant, 2016. 9(9): p. 1272-1285 [PMID:27373216] Seok HY, et al. Arabidopsis AtNAP functions as a negative regulator via repression of AREB1 in salt stress response. Planta, 2017. 245(2): p. 329-341 [PMID:27770200]