PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa03g016800.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 332aa    MW: 36715.3 Da    PI: 7.935
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa03g016800.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.3e-1753103155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++y+GVr+++ +gr++AeIrdp    ++  r +lg+f+taeeAa a++ a+++++g
  Csa03g016800.1  53 TRYRGVRRRP-WGRYAAEIRDP----ISkERRWLGTFDTAEEAACAYDSAARAFRG 103
                     68********.**********7....236999*********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.87E-3053110No hitNo description
PfamPF008473.0E-1053103IPR001471AP2/ERF domain
SMARTSM003801.9E-3154117IPR001471AP2/ERF domain
PROSITE profilePS5103222.45854111IPR001471AP2/ERF domain
SuperFamilySSF541713.79E-2154111IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.5E-2954110IPR001471AP2/ERF domain
PRINTSPR003671.7E-95566IPR001471AP2/ERF domain
PRINTSPR003671.7E-97793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MEEALRNFHG TNETDPINPF TRNFTSATSS SVNRKKSSKD TTVTVSGASS STTRYRGVRR  60
RPWGRYAAEI RDPISKERRW LGTFDTAEEA ACAYDSAARA FRGAKARTNF IYPTAVMVPE  120
PRFSFSTKKS MPSVRFPIPS LPLDHSTHEF YGGSAPQQNI NTQSIFLRDP SCSSRKASTF  180
SNSFNGSSSS YSTPKTASIT SSENENYESF FPEESSDSGL LQEVVQEFMK KNRGTPPPPP  240
PTPLPVSSHY ENSGDFSART IYSDNMFQET NEALTSKLDR YGNFQGNDSG YFDGVSAAVD  300
GGLTYGSNEW AYQEMLMYGT QLGCTCRRSW G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1847110771Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates gene expression patterns in meristems and thus modulates organ development. Required for correct embryo patterning and cotyledon organogenesis. Modulates auxin signaling pathway in early embryos. Involved in the cytokinin signaling pathway that promotes shoot regeneration. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11752375, ECO:0000269|PubMed:12615942, ECO:0000269|PubMed:17376809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa03g016800.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cytokinins. {ECO:0000269|PubMed:11752375}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010494837.10.0PREDICTED: ethylene-responsive transcription factor ESR1-like
SwissprotQ9SAD41e-159ESR1_ARATH; Ethylene-responsive transcription factor ESR1
TrEMBLR0GMZ60.0R0GMZ6_9BRAS; Uncharacterized protein
STRINGXP_010494837.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM140721723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12980.11e-126ERF family protein
Publications ? help Back to Top
  1. Seeliger I, et al.
    The AP2-type transcription factors DORNRÖSCHEN and DORNRÖSCHEN-LIKE promote G1/S transition.
    Mol. Genet. Genomics, 2016. 291(5): p. 1835-49
    [PMID:27277595]
  2. Iwase A, et al.
    WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis.
    Plant Cell, 2017. 29(1): p. 54-69
    [PMID:28011694]
  3. Capua Y,Eshed Y
    Coordination of auxin-triggered leaf initiation by tomato LEAFLESS.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(12): p. 3246-3251
    [PMID:28270611]
  4. Chandler JW,Werr W
    DORNRÖSCHEN, DORNRÖSCHEN-LIKE, and PUCHI redundantly control floral meristem identity and organ initiation in Arabidopsis.
    J. Exp. Bot., 2017. 68(13): p. 3457-3472
    [PMID:28859377]
  5. Luo L,Zeng J,Wu H,Tian Z,Zhao Z
    A Molecular Framework for Auxin-Controlled Homeostasis of Shoot Stem Cells in Arabidopsis.
    Mol Plant, 2018. 11(7): p. 899-913
    [PMID:29730265]