PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa01g008770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | GeBP | ||||||||
Protein Properties | Length: 359aa MW: 39658.2 Da PI: 5.5951 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 98.9 | 4.7e-31 | 87 | 177 | 3 | 98 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 ++rlws++De+v+L+G++d+++ktg ++ +d af+e++k+ i+ vsk+ql++Kir+LK Kf++ + k +psf++++d++if+ls+ iWg Csa01g008770.1 87 SKRLWSKHDELVILKGIVDYQNKTGLDYRSDSAAFFEYIKDGIDGIVSKDQLMNKIRKLKSKFRDSSVK-----KPSFTNPQDSEIFDLSMAIWG 176 79**************************************************************99888.....9*******************9 PP DUF573 98 s 98 + Csa01g008770.1 177 K 177 5 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.9E-24 | 88 | 176 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 359 aa Download sequence Send to blast |
MVNKKHRCSG DGGFSDTYTC DLELRVKNSN GFLPPSPPDS PVLNSPENLD STPIAAAAAA 60 FDDTPTLSKT RKKRKATLSP SYAPSDSKRL WSKHDELVIL KGIVDYQNKT GLDYRSDSAA 120 FFEYIKDGID GIVSKDQLMN KIRKLKSKFR DSSVKKPSFT NPQDSEIFDL SMAIWGKVKP 180 GCVDDRAKRT RSKVQAFVEH EVVTNGEPEN DDRLAEGDTF DKNADKNTEN ENGGKRSEED 240 GAMTNGEPEN DDGAAKGGSC DEKLPSESVE KRVEKGSEEE DGAADDELCA LQDALETTMF 300 QHIGNYAQKQ MLQKLKTIRA KERKELSGEW KSLLVQEALL KSKKYSFTAK LANAAFHN* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa01g008770.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010456860.1 | 0.0 | PREDICTED: GLABROUS1 enhancer-binding protein-like isoform X1 | ||||
TrEMBL | D7L707 | 1e-69 | D7L707_ARALL; Uncharacterized protein | ||||
STRING | XP_010456860.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17435 | 5 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G00270.1 | 9e-37 | DNA-binding storekeeper protein-related transcriptional regulator |