PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa01g008770.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GeBP
Protein Properties Length: 359aa    MW: 39658.2 Da    PI: 5.5951
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa01g008770.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57398.94.7e-3187177398
          DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                     ++rlws++De+v+L+G++d+++ktg ++ +d  af+e++k+ i+  vsk+ql++Kir+LK Kf++ + k     +psf++++d++if+ls+ iWg
  Csa01g008770.1  87 SKRLWSKHDELVILKGIVDYQNKTGLDYRSDSAAFFEYIKDGIDGIVSKDQLMNKIRKLKSKFRDSSVK-----KPSFTNPQDSEIFDLSMAIWG 176
                     79**************************************************************99888.....9*******************9 PP

          DUF573  98 s 98 
                     +
  Csa01g008770.1 177 K 177
                     5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.9E-2488176IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MVNKKHRCSG DGGFSDTYTC DLELRVKNSN GFLPPSPPDS PVLNSPENLD STPIAAAAAA  60
FDDTPTLSKT RKKRKATLSP SYAPSDSKRL WSKHDELVIL KGIVDYQNKT GLDYRSDSAA  120
FFEYIKDGID GIVSKDQLMN KIRKLKSKFR DSSVKKPSFT NPQDSEIFDL SMAIWGKVKP  180
GCVDDRAKRT RSKVQAFVEH EVVTNGEPEN DDRLAEGDTF DKNADKNTEN ENGGKRSEED  240
GAMTNGEPEN DDGAAKGGSC DEKLPSESVE KRVEKGSEEE DGAADDELCA LQDALETTMF  300
QHIGNYAQKQ MLQKLKTIRA KERKELSGEW KSLLVQEALL KSKKYSFTAK LANAAFHN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa01g008770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010456860.10.0PREDICTED: GLABROUS1 enhancer-binding protein-like isoform X1
TrEMBLD7L7071e-69D7L707_ARALL; Uncharacterized protein
STRINGXP_010456860.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1743558
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00270.19e-37DNA-binding storekeeper protein-related transcriptional regulator