PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa01g006220.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

MYB_related

Protein Properties

Length: 1049aa MW: 117099 Da PI: 9.9067

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa01g006220.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.2	1.6e-07	44	72	3	32
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg 32 WT E e+++da +++G + Wk++a+ + Csa01g006220.1 44 QWTRKELERFYDAYRKHGQE-WKKVAAAVR 72 6*****************.***9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.15E-6	43	90	IPR009057	Homeodomain-like
Pfam	PF00249	7.5E-6	44	81	IPR001005	SANT/Myb domain
Pfam	PF06584	5.6E-31	633	733	IPR033471	DIRP domain
SMART	SM01135	6.5E-56	633	734	IPR033471	DIRP domain
SMART	SM00333	0.0056	720	777	IPR002999	Tudor domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005654	Cellular Component	nucleoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1049 aa Download sequence Send to blast
MAPVRNSRSV NKRFTNEISP GKDAGNSRKN KQRKKKLSDK LGPQWTRKEL ERFYDAYRKH 60 GQEWKKVAAA VRHSRSIDMV EALFNMNRAY LSLPEGTASV AGLIAMMTDH YSVMEGSGSE 120 GEGHDASEVP RKQQKRKRAK PQLSDSREEV DIQHSVASTD GCLTFLKQAR ANGTQRRATG 180 KRTPRVPVQT SYMGDDREGS TPPNKRARKQ FDANDDVAHF IALALTDASR RGGSSKVSES 240 PNRRTELSDS TPIKSWGNMS RTRKSQSKHC DNSIFKEWVG SSQERKLESD KDTALLMDME 300 GVSEMEAPPK AKRFYKKKVK VEVEEAEGND SDDNGECTAT EGVRIKSQRR KAAIEASRRK 360 HSPRNTKKKD KKLTSGDGFG ALQELAELSA LLESESSARL KEERTEYDMD EKSSTPEATS 420 SSSHGEKANA EPDDSLLHAI SSAENTNKRK PKPSRQASTD CDAVPTEKLQ SQTSGSLRRK 480 RKPKVLGDEA PADFSQNKSI NKKELHQDEN NMKSFVRTKR AGQGPAQSKQ LKTVQALEES 540 ATTSDKNRPV MDVIASTKEI SDSGPASVSQ KPPNKRKISL KKSLQERAKS SETIHKVSRS 600 SRTLSVQEFF LKDKLSTSLS YPLARRRCIF EWFYSAIDHP WFAKKEFADY LAHVGLGHMP 660 RLTRLEWSVV KSSLGQPRRF SEKFLQEEKE KLKQYRESVR KHYTALRTGA REGLPSDLAR 720 PLSVGNRVIA IHPKTREIHD GKILTVDHNK CNVLFDDLGV ELVMDIDCMP SNHLEYMPVG 780 LRRQIDKCLS MKKEAESGNS NLGVSVIFPP CGPENVSFPM NPPLNQGDVV APIQHGKVST 840 NTSSPQQTNH SYITASSKAR EAEIQRALAL QHALDEKEME PEMLEIVKGS KTRAQAMVDA 900 AIKAASSGKE GEDVKKMIQE ALDLIDKHQT LRGFKFKHNE HVNGSIDPNQ NHNPSPSDAS 960 DPNDFNSQDG SEKNEAQIPS ELITSCVATW LMIQMCTERQ YPPADVAKLI DAAFTSLQPR 1020 CPQNLPIYRE IQTCMGRIKT QILALVPT*

Sequence ? help Back to Top

Protein Sequence Length: 1049 aa Download sequence Send to blast

MAPVRNSRSV NKRFTNEISP GKDAGNSRKN KQRKKKLSDK LGPQWTRKEL ERFYDAYRKH  60
GQEWKKVAAA VRHSRSIDMV EALFNMNRAY LSLPEGTASV AGLIAMMTDH YSVMEGSGSE  120
GEGHDASEVP RKQQKRKRAK PQLSDSREEV DIQHSVASTD GCLTFLKQAR ANGTQRRATG  180
KRTPRVPVQT SYMGDDREGS TPPNKRARKQ FDANDDVAHF IALALTDASR RGGSSKVSES  240
PNRRTELSDS TPIKSWGNMS RTRKSQSKHC DNSIFKEWVG SSQERKLESD KDTALLMDME  300
GVSEMEAPPK AKRFYKKKVK VEVEEAEGND SDDNGECTAT EGVRIKSQRR KAAIEASRRK  360
HSPRNTKKKD KKLTSGDGFG ALQELAELSA LLESESSARL KEERTEYDMD EKSSTPEATS  420
SSSHGEKANA EPDDSLLHAI SSAENTNKRK PKPSRQASTD CDAVPTEKLQ SQTSGSLRRK  480
RKPKVLGDEA PADFSQNKSI NKKELHQDEN NMKSFVRTKR AGQGPAQSKQ LKTVQALEES  540
ATTSDKNRPV MDVIASTKEI SDSGPASVSQ KPPNKRKISL KKSLQERAKS SETIHKVSRS  600
SRTLSVQEFF LKDKLSTSLS YPLARRRCIF EWFYSAIDHP WFAKKEFADY LAHVGLGHMP  660
RLTRLEWSVV KSSLGQPRRF SEKFLQEEKE KLKQYRESVR KHYTALRTGA REGLPSDLAR  720
PLSVGNRVIA IHPKTREIHD GKILTVDHNK CNVLFDDLGV ELVMDIDCMP SNHLEYMPVG  780
LRRQIDKCLS MKKEAESGNS NLGVSVIFPP CGPENVSFPM NPPLNQGDVV APIQHGKVST  840
NTSSPQQTNH SYITASSKAR EAEIQRALAL QHALDEKEME PEMLEIVKGS KTRAQAMVDA  900
AIKAASSGKE GEDVKKMIQE ALDLIDKHQT LRGFKFKHNE HVNGSIDPNQ NHNPSPSDAS  960
DPNDFNSQDG SEKNEAQIPS ELITSCVATW LMIQMCTERQ YPPADVAKLI DAAFTSLQPR  1020
CPQNLPIYRE IQTCMGRIKT QILALVPT*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	140	QKRKRAKP
2	476	482	LRRKRKP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa01g006220.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ583496	0.0	AJ583496.1 Arabidopsis thaliana mRNA for Arabidopsis always early 2 protein (Ataly2 gene).
GenBank	AY080604	0.0	AY080604.1 Arabidopsis thaliana unknown protein (At3g05380) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019100091.1	0.0	PREDICTED: protein ALWAYS EARLY 2 isoform X2
Swissprot	Q6A333	0.0	ALY2_ARATH; Protein ALWAYS EARLY 2
TrEMBL	R0HJB2	0.0	R0HJB2_9BRAS; Uncharacterized protein
STRING	XP_010426428.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2962	22	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-66	DNA binding

Publications ? help Back to Top
Pfaff C, et al. ALY RNA-Binding Proteins Are Required for Nucleocytosolic mRNA Transport and Modulate Plant Growth and Development. Plant Physiol., 2018. 177(1): p. 226-240 [PMID:29540591]