PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_40484_BGI-A2_v1.0
Common NameF383_17504
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WRKY
Protein Properties Length: 267aa    MW: 29959.2 Da    PI: 4.912
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_40484_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.32.1e-3053111259
                                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                 +D ++WrKYGqK++kgs++pr+YYrC+++ gC++kk+ver+++d ++++itY+++Hnh+
  Cotton_A_40484_BGI-A2_v1.0  53 SDLWSWRKYGQKPIKGSPYPRGYYRCSTSkGCSAKKQVERCKTDASMLIITYTSSHNHP 111
                                 699***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-3147113IPR003657WRKY domain
PROSITE profilePS5081130.97447113IPR003657WRKY domain
SuperFamilySSF1182907.72E-2650113IPR003657WRKY domain
SMARTSM007747.1E-3652112IPR003657WRKY domain
PfamPF031062.0E-2554111IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MDDSVSPKLA SEDSELNPTD TQSSKRRKVV EKIVVTVKVG ENGGKLKSEG PPSDLWSWRK  60
YGQKPIKGSP YPRGYYRCST SKGCSAKKQV ERCKTDASML IITYTSSHNH PGPDLHCADL  120
KQSPKEPQTT HSDDDKPPTT TLKQLPEVSE KEPEEVKKEQ NKTSSTDEDA SEEQHFHYLQ  180
SPLSFPQNNI ISQEDPFNGN LEKTHDTLGF LLDEEPLSCL HITTSSIPKS EENDFFDELE  240
ELPISSAFTS LMMRSKFWDE GIPVVPS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-22531131779Disease resistance protein RRS1
5w3x_D2e-22531131779Disease resistance protein RRS1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6697860.0KF669786.1 Gossypium hirsutum WRKY transcription factor 53 (WRKY53) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017628382.10.0PREDICTED: WRKY transcription factor 22-like isoform X2
TrEMBLA0A0B0NJQ20.0A0A0B0NJQ2_GOSAR; Putative WRKY transcription factor 35-like protein
STRINGGorai.007G122300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM153711117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-34WRKY family protein