PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Cotton_A_39901_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 333aa MW: 38072.6 Da PI: 7.4293

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_39901_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.6	9.4e-05	255	277	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ Cotton_A_39901_BGI-A2_v1.0 255 FMCRKCGKAFAVRGDWRTHEKNC 277 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.68E-5	167	194	No hit	No description
SMART	SM00355	0.38	171	193	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	4.8E-6	171	190	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.097	171	198	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	173	193	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.25E-6	237	275	No hit	No description
Gene3D	G3DSA:3.30.160.60	8.7E-6	242	275	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.808	255	275	IPR007087	Zinc finger, C2H2
SMART	SM00355	49	255	275	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MADNHYSNFF SGWFKFNPLD QHYPSPIHPL QKPNPHSQNS HKNGTTNLNP FLHYRTTYSS 60 SPPSPPVREA LPLLSLSPTR HYKDEDGVYQ DQDQEQHSCT AMDVNGEDDD ETVTVALHIG 120 LPSPSASELA SVLSASSVMT EQDDEYPINR LNKRQYWIPT PSQILIGPSQ FSCPVCCKTF 180 NRYNNMQMHM WAHGSQYRKG PESLRGTQPT AMLRLPCYCC APGCRNNIDH PRPKPLKDFR 240 TLQTHYKRKH GIKPFMCRKC GKAFAVRGDW RTHEKNCGKL WYCICGSDFK HKRSLKDHIK 300 AFGDGHQVYA TDDLEEEDDE PASEVEQHNG SLH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX579096	1e-164	JX579096.1 Gossypium hirsutum clone NBRI_GE11269 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017640165.1	0.0	PREDICTED: zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-133	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A2P5WTP4	0.0	A0A2P5WTP4_GOSBA; Uncharacterized protein
STRING	Gorai.002G152600.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-121	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]