PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_36719_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 418aa    MW: 45737 Da    PI: 8.6473
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_36719_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.72.5e-1766115255
                         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                 +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a+++++g
  Cotton_A_36719_BGI-A2_v1.0  66 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDCAARAMRG 115
                                 59*******.**********93....35999**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.4E-2966122IPR001471AP2/ERF domain
SMARTSM003801.5E-3266131IPR001471AP2/ERF domain
PfamPF008476.7E-1166115IPR001471AP2/ERF domain
SuperFamilySSF541714.18E-2166123IPR016177DNA-binding domain
CDDcd000181.60E-2966122No hitNo description
PROSITE profilePS5103222.04966123IPR001471AP2/ERF domain
PRINTSPR003672.5E-96778IPR001471AP2/ERF domain
PRINTSPR003672.5E-989105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MEEAFRRLKG VVNVTDLDPR DATTYRKKSA VSTTTSATST TTTSTTPTTT NKRSLKENGG  60
TGGTMRYRGV RRRPWGRYAA EIRDPQSKER RWLGTFDTAE EAACAYDCAA RAMRGIKART  120
NFVYPVTEPH SASDHLLPQF SFSRQSQLNR KHHHFGHSSK WPPFANSQVG DFSLGSGGHQ  180
RNASLNMLLL RDLLNSSSYL SFQAPPPSLV DQFQLINGTS SAASSLPSSF SIPTILPGGT  240
SLNSPTSCSL RASGNFADSL IDSTMTLPRK EKNSSHTTSV PALSNSQADD MEFFRSEPSD  300
SGLLQEIIQG FLPKPSSKKS DTDCIQHSIV PLVTEMSSSQ SLSGLKESKK SEHLGGYIDY  360
CQGVPQQLSF NGITGSQVVP YSNEIPVNHL QLGQDCMVDD ICQYPDFMRT LATRVQNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-19661221471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5906974e-77JX590697.1 Gossypium hirsutum clone NBRI_GE25669 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017620916.10.0PREDICTED: ethylene-responsive transcription factor ESR2-like
TrEMBLA0A1U8KMR10.0A0A1U8KMR1_GOSHI; ethylene-responsive transcription factor ESR2-like
STRINGGorai.002G187500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73552541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.11e-13DORNROSCHEN-like