PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_32766_BGI-A2_v1.0 | ||||||||
Common Name | F383_29127 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 504aa MW: 55672.8 Da PI: 5.4189 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39.7 | 8.8e-13 | 358 | 404 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq Cotton_A_32766_BGI-A2_v1.0 358 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 404 799***********************66......*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.5E-44 | 49 | 234 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.831 | 354 | 403 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.41E-19 | 357 | 426 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.22E-14 | 357 | 408 | No hit | No description |
Pfam | PF00010 | 2.9E-10 | 358 | 404 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.3E-18 | 358 | 424 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.4E-14 | 360 | 409 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 504 aa Download sequence Send to blast |
MGEMFWANEE DKAKVESVLG TEACDYLILL ASKNMLSDFI SPPPSYLGLQ QKLCEVVERS 60 NWNYASYWQV SSLKSGGSIL IWGDGHCRDL KLGGVGDASC SADAKLEGVE KINEVRKQVL 120 QKLRACFGGS EEDNYPAKLD GVSDMEMFYL TSMFFKFHCD ASYGPAESYK SSKPIWSSDS 180 NCFSDHYQSR SFLARSAGLQ TVVFVPVKSG VVELGSVNLI PEDQNVVEMV SAMFGGSSSV 240 QTRTVPKIFG RELSLGGSKS QSISINFSPK MEDESGFMLE SYDVQALGSN QVYGNSSNGS 300 QGDSEAKLFP QLLVGGPNTQ ARISGVEHPK DDSPSLPDER KPRKRGRKPA NGREEPLNHV 360 EAERQRREKL NQRFYALRAV VPNISKMDKA SLLGDAITYI TDLQMKIRVL ETEKEMVNNG 420 QKQLSMPDID FQQRHEDAVV TMRYPLDAHP VSQVLKALKE NQITARESDV STTDNDKIVH 480 TFTIGAPGGA AEQLKEKLLD ALSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 6e-29 | 352 | 426 | 2 | 76 | Transcription factor MYC2 |
5gnj_B | 6e-29 | 352 | 426 | 2 | 76 | Transcription factor MYC2 |
5gnj_E | 6e-29 | 352 | 426 | 2 | 76 | Transcription factor MYC2 |
5gnj_F | 6e-29 | 352 | 426 | 2 | 76 | Transcription factor MYC2 |
5gnj_G | 6e-29 | 352 | 426 | 2 | 76 | Transcription factor MYC2 |
5gnj_I | 6e-29 | 352 | 426 | 2 | 76 | Transcription factor MYC2 |
5gnj_M | 6e-29 | 352 | 426 | 2 | 76 | Transcription factor MYC2 |
5gnj_N | 6e-29 | 352 | 426 | 2 | 76 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 339 | 347 | RKPRKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00099 | PBM | Transfer from AT4G16430 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017615658.1 | 0.0 | PREDICTED: transcription factor bHLH3 | ||||
Swissprot | A0A3Q7H216 | 0.0 | MTB3_SOLLC; Transcription factor MTB3 | ||||
TrEMBL | A0A0B0PEY1 | 0.0 | A0A0B0PEY1_GOSAR; Transcription factor bHLH3-like protein | ||||
STRING | Gorai.007G143800.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6611 | 27 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16430.1 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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