PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_29003_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | AP2 | ||||||||
Protein Properties | Length: 378aa MW: 42590.5 Da PI: 7.9064 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 36.4 | 1.3e-11 | 67 | 123 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..krkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+k + g ++ +e Aa+a++ a++k++g Cotton_A_29003_BGI-A2_v1.0 67 SRFRGVSRHRWTGRYEAHLWDkLSWNIsqKKKGKQ-GAYDEEEAAARAYDLAALKYWG 123 789******************88887784446666.9*******************98 PP | |||||||
2 | AP2 | 53.1 | 7.9e-17 | 166 | 217 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++++grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g Cotton_A_29003_BGI-A2_v1.0 166 SKYRGVARHHNNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 217 89****************99966...3.6*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.9E-14 | 67 | 133 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.5E-9 | 67 | 123 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.083 | 68 | 131 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-12 | 68 | 132 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-18 | 68 | 137 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-5 | 69 | 80 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.87E-25 | 166 | 227 | No hit | No description |
SuperFamily | SSF54171 | 4.25E-18 | 166 | 227 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.4E-12 | 166 | 217 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.3E-18 | 167 | 226 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.6E-27 | 167 | 231 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.979 | 167 | 225 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.6E-5 | 207 | 227 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MDMEMGMVND EQCLGLGDSQ NVQVEGIRCA KRRRRDPAVS VAFDNRDGHQ QRNAAATATA 60 TTVKRSSRFR GVSRHRWTGR YEAHLWDKLS WNISQKKKGK QGAYDEEEAA ARAYDLAALK 120 YWGTSTFTNF PISDYAKEIE IMQTLTKEEY LASLRRKSSG FSRGVSKYRG VARHHNNGRW 180 EARIGRVFGN KYLYLGTYST QEEAARAYDI AAIEYRGINA VTNFDLSTYI RWLKPNESLP 240 MAVEPEPVIL PSQASTPGEE SKPSVNHSST ADYLNSSPKQ VVESKIHVMN SNKCSSTTAL 300 GLLLRSSIFR DLVEKNVANV CEDESGSTDE NEEKNKHLAG NDDEFCGLFY NGIGTEFPFF 360 RSSMKDTMEL QERGSSFI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017613692.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A1U8PNE7 | 0.0 | A0A1U8PNE7_GOSHI; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
STRING | Gorai.012G056300.1 | 0.0 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM553 | 27 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54320.3 | 7e-76 | AP2 family protein |