PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_28416_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 93aa MW: 10581.2 Da PI: 10.6797 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 97.8 | 4.3e-31 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien rqvtfskRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss Cotton_A_28416_BGI-A2_v1.0 9 KRIENAASRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSS 59 79***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.0E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 31.567 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.28E-43 | 3 | 71 | No hit | No description |
SuperFamily | SSF55455 | 2.49E-33 | 3 | 73 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.4E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.2E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 93 aa Download sequence Send to blast |
MVRGKTQMKR IENAASRQVT FSKRRNGLLK KAFELSVLCD AEVALIIFSP RGKLYEFSSS 60 SMSKTIERYE KREKDNIGIN NKLAAVDQNT QVP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 5e-21 | 1 | 69 | 1 | 69 | MEF2C |
5f28_B | 5e-21 | 1 | 69 | 1 | 69 | MEF2C |
5f28_C | 5e-21 | 1 | 69 | 1 | 69 | MEF2C |
5f28_D | 5e-21 | 1 | 69 | 1 | 69 | MEF2C |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor active in flowering time control. May control internode elongation and promote floral transition phase. May act upstream of the floral regulators MADS1, MADS14, MADS15 and MADS18 in the floral induction pathway. {ECO:0000269|PubMed:15144377, ECO:0000269|PubMed:17166135}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016755605.1 | 1e-59 | PREDICTED: agamous-like MADS-box protein AGL19 isoform X2 | ||||
Refseq | XP_016755606.1 | 1e-59 | PREDICTED: agamous-like MADS-box protein AGL19 isoform X2 | ||||
Refseq | XP_016755607.1 | 1e-59 | PREDICTED: agamous-like MADS-box protein AGL19 isoform X2 | ||||
Refseq | XP_017640737.1 | 1e-59 | PREDICTED: agamous-like MADS-box protein AGL19 isoform X3 | ||||
Swissprot | Q9XJ60 | 2e-41 | MAD50_ORYSJ; MADS-box transcription factor 50 | ||||
TrEMBL | A0A1U8PWS1 | 2e-58 | A0A1U8PWS1_GOSHI; agamous-like MADS-box protein AGL19 isoform X2 | ||||
TrEMBL | A0A2P5Y0J4 | 2e-58 | A0A2P5Y0J4_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.003G163900.1 | 5e-56 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM78 | 28 | 413 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11880.1 | 1e-43 | AGAMOUS-like 14 |