PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_25257_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 633aa    MW: 69799.5 Da    PI: 6.9945
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_25257_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP239.11.9e-12297353155
                         AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  Cotton_A_25257_BGI-A2_v1.0 297 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 353
                                 78*******************77776664346655.77******************98 PP
2AP246.59e-15396447155
                         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Cotton_A_25257_BGI-A2_v1.0 396 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 447
                                 57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.09E-14297363IPR016177DNA-binding domain
CDDcd000185.58E-19297361No hitNo description
PfamPF008471.1E-9297353IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-12298362IPR001471AP2/ERF domain
SMARTSM003802.9E-22298367IPR001471AP2/ERF domain
PROSITE profilePS5103217.359298361IPR001471AP2/ERF domain
PRINTSPR003674.7E-6299310IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-17396456IPR016177DNA-binding domain
PfamPF008471.3E-9396447IPR001471AP2/ERF domain
CDDcd000183.28E-25396457No hitNo description
PROSITE profilePS5103219.019397455IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.7E-18397455IPR001471AP2/ERF domain
SMARTSM003802.8E-34397461IPR001471AP2/ERF domain
PRINTSPR003674.7E-6437457IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MKTMSDNGSG SNNNWLGFSL SPHMKMEVTN DPHHRHDHHH HFHHHSQASA AGTAVNVVPT  60
SFYGSGICFG VGESEGFHAP PLSVMPLKSD GSLCIMEALS RSQSEGIVPT SSPKLEDFLG  120
GATMETHQYG SHERETMALS LDSMYYQQNA DHETNFAVQT HPYYSGLALQ GMYQSPSLEE  180
EAKDGQLADC DTMPCFKNWV ARQQYSTHSS LEQQMTTSIV DDGAGSVPAI GCGDLQSLSL  240
SMSPGSHSSC VTAQRQISPT ATTECVAIET KKRGPGKVSQ KQTVHRKSID TFGQRTSQYR  300
GVTRHRWTGR YEAHLWDNSC KKEGQTRKGR QGGYDMEEKA ARAYDLAALK YWGPSTHINF  360
PLENYREELE EMKNMNRQEY VAHLRRKSSG FSRGASIYRG VTRHHQHGRW QARIGRVAGN  420
KDLYLGTFST QEEAAEAYDI AAIKFRGVNA VTNFDITRYD VERIMASSTL LAGELARRNK  480
EMDSNNDTIE TNGETIQHGH VSQQQLTVCA AESLEPKTTN TGNYRNPSFS MALQDLIGVD  540
LVSSTQAMVD ESCKLGTHYS NPSSLVTSVS NSRDGSPDKT GSTMVFAKPP LASKFITPTN  600
GVNWFPSSTA TQLRPATAIS MAHLPLFAAW NDT
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017643289.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT
SwissprotQ389141e-159ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
TrEMBLA0A0D2U4Z30.0A0A0D2U4Z3_GOSRA; Uncharacterized protein
STRINGGorai.010G028100.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31372863
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-149AP2 family protein
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Horstman A,Willemsen V,Boutilier K,Heidstra R
    AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks.
    Trends Plant Sci., 2014. 19(3): p. 146-57
    [PMID:24280109]
  3. Li C, et al.
    Ectopic expression of a maize hybrid down-regulated gene ZmARF25 decreases organ size by affecting cellular proliferation in Arabidopsis.
    PLoS ONE, 2014. 9(4): p. e94830
    [PMID:24756087]
  4. Wynn AN,Seaman AA,Jones AL,Franks RG
    Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development.
    Front Plant Sci, 2014. 5: p. 130
    [PMID:24778638]
  5. Randall RS, et al.
    AINTEGUMENTA and the D-type cyclin CYCD3;1 regulate root secondary growth and respond to cytokinins.
    Biol Open, 2015. 4(10): p. 1229-36
    [PMID:26340943]
  6. Meng LS,Wang ZB,Yao SQ,Liu A
    The ARF2-ANT-COR15A gene cascade regulates ABA-signaling-mediated resistance of large seeds to drought in Arabidopsis.
    J. Cell. Sci., 2015. 128(21): p. 3922-32
    [PMID:26395398]
  7. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  8. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  9. Han H,Krizek BA
    AINTEGUMENTA-LIKE6 can functionally replace AINTEGUMENTA but alters Arabidopsis flower development when misexpressed at high levels.
    Plant Mol. Biol., 2016. 92(4-5): p. 597-612
    [PMID:27605095]
  10. Karpinska B,Alomrani SO,Foyer CH
    Inhibitor-induced oxidation of the nucleus and cytosol in Arabidopsis thaliana: implications for organelle to nucleus retrograde signalling.
    Philos. Trans. R. Soc. Lond., B, Biol. Sci., 2018.
    [PMID:28808105]
  11. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]