PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_19860_BGI-A2_v1.0
Common NameF383_24767
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ARR-B
Protein Properties Length: 679aa    MW: 74406.7 Da    PI: 6.5152
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_19860_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.38.2e-29213266155
                     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                 kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  Cotton_A_19860_BGI-A2_v1.0 213 KPRVVWSVELHQQFVAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 266
                                 79*******************.********************************8 PP
2Response_reg73.39.8e-25351431109
                                 EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTT CS
                Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahg 81 
                                 vl+vdD+p+ +++l+++l    y +v+ +  +e al +l+e++  +D++l D+ mp+mdG++ll++i  e  +lp+i+++a +
  Cotton_A_19860_BGI-A2_v1.0  35 VLVVDDDPTCLMILEKMLIACLY-KVTKCNRAETALSKLRENKngYDIVLSDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADD 115
                                 89*****************9999.***************999999**********************6654.8********** PP

                                 THHHHHHHHHTTESEEEESS--HHHHHH CS
                Response_reg  82 eeedalealkaGakdflsKpfdpeelvk 109
                                  ++ + + +  Ga d+l Kp+ +e+l +
  Cotton_A_19860_BGI-A2_v1.0 116 GKQVVMKGVTHGACDYLIKPVRIEALKN 143
                                 ************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363928.7E-1779671IPR017053Response regulator B-type, plant
SuperFamilySSF521721.85E-3432157IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23002.6E-4132174No hitNo description
SMARTSM004482.2E-2933145IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.72534149IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.4E-2235143IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.12E-2636148No hitNo description
PROSITE profilePS5129411.048210269IPR017930Myb domain
SuperFamilySSF466893.58E-20210270IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-30212271IPR009057Homeodomain-like
TIGRFAMsTIGR015579.7E-25213266IPR006447Myb domain, plants
PfamPF002499.8E-8215265IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 679 aa     Download sequence    Send to blast
MNVSSVKGSM SISSSTSTWK AGDTISDQFP AGLRVLVVDD DPTCLMILEK MLIACLYKVT  60
KCNRAETALS KLRENKNGYD IVLSDVHMPD MDGFKLLEHI GLEMDLPVIM MSADDGKQVV  120
MKGVTHGACD YLIKPVRIEA LKNIWQHVVR KRKNEWKEFE QSGSVEEGDR QPKQSDDADY  180
SSSANEGNWK GSKKRKDEEE ETDERDDTST LKKPRVVWSV ELHQQFVAAV NQLGIDKAVP  240
KKILELMNVP GLTRENVASH LQKYRLYLRR LSGVSQHQSN LSTIISAQDP TFGSLSSLSG  300
LDLQTLAATG QLPAQSLARL QAAGLGRATA KSGIPITLVD QRNIFSFENP KLRFGEGQQQ  360
HMTNKQQVNL LHGIPTTMEP KQLVSLRHAA QSIGNMNMQV PPHGAQNSQN NPLLMQMGQQ  420
QQQSRGQILV DSTINHAPRL SSSMGQPILS NGIATNVSSR NGIPENIRAP GYSQTPSMLN  480
FPVNHASELP GNSFALGSTP GVSILTSKGA FQEDVNSEIK GSGGLMPSYD VFNDLNQHKP  540
QSWELQNVGM AFDTSQHSNS LQGNLDLTQS ALGQQGFSSG QMNGHNRSAA VANKAMFSTG  600
DVKELGSAQN VNQHLNNLLV DNTIRIKSER VCDTSPANIF PDHFGQDDLM SALLKQQESV  660
ASSENEFDFD GYSMNNIPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-22212272464ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ3934656e-83GQ393465.1 Gossypium hirsutum cultivar Deltapine 33 B clone MONCS0430 SSR marker CGR5416 genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017649032.10.0PREDICTED: two-component response regulator ARR2-like isoform X1
SwissprotQ9ZWJ90.0ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A0B0MT300.0A0A0B0MT30_GOSAR; Two-component response regulator
STRINGGorai.011G196400.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24032773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.10.0response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]