PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_14567_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 147aa MW: 16535.7 Da PI: 7.9202 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 45.8 | 7.6e-15 | 11 | 53 | 1 | 43 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 krie+ rq+ +sk r+gi+KKA ELSv d+++ +++fs+t Cotton_A_14567_BGI-A2_v1.0 11 KRIEDLCFRQIAYSKCREGIFKKAAELSVFSDTDIGLLLFSPT 53 79***************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 15.937 | 3 | 53 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.7E-11 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.93E-14 | 4 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-8 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-12 | 12 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-8 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.4E-8 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MSCRRTRPVM KRIEDLCFRQ IAYSKCREGI FKKAAELSVF SDTDIGLLLF SPTVKPNISY 60 LSSLQNAKLL ENEASTSKLK DAEVSAVEVK DSDFTTEESV NSKRKRNKSE DDEKEEAGSS 120 AVEVPCPTPH LNISFLKTQT NWNLQKA |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021298974.1 | 2e-21 | agamous-like MADS-box protein AGL66 isoform X2 | ||||
TrEMBL | A0A2P5YI85 | 1e-56 | A0A2P5YI85_GOSBA; Uncharacterized protein | ||||
STRING | EOX99189 | 4e-17 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM35619 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11880.1 | 1e-11 | AGAMOUS-like 14 |