PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_13122_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | LSD | ||||||||
Protein Properties | Length: 74aa MW: 7904.33 Da PI: 8.1479 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 48.5 | 1.4e-15 | 6 | 30 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV Cotton_A_13122_BGI-A2_v1.0 6 CGGCHTLLMYIRGATSVQCSCCHTV 30 ************************9 PP | |||||||
2 | zf-LSD1 | 43.5 | 5e-14 | 44 | 68 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V Cotton_A_13122_BGI-A2_v1.0 44 CGNCRMLLMYQYGARSVKCAVCNFV 68 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 2.4E-15 | 3 | 32 | IPR005735 | Zinc finger, LSD1-type |
Gene3D | G3DSA:3.90.10.10 | 9.9E-4 | 5 | 66 | No hit | No description |
Pfam | PF06943 | 4.0E-13 | 6 | 30 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.1E-12 | 41 | 71 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 3.1E-13 | 44 | 68 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 74 aa Download sequence Send to blast |
MAQLVCGGCH TLLMYIRGAT SVQCSCCHTV NLALEANQVA HVNCGNCRML LMYQYGARSV 60 KCAVCNFVTS VGVS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004300252.1 | 2e-47 | PREDICTED: protein LOL1 | ||||
Swissprot | Q0J7V9 | 1e-46 | LSD1_ORYSJ; Protein LSD1 | ||||
TrEMBL | A0A371GF98 | 1e-46 | A0A371GF98_MUCPR; Protein LOL1 (Fragment) | ||||
STRING | XP_004300252.1 | 7e-47 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7293 | 26 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 8e-48 | lsd one like 1 |
Publications ? help Back to Top | |||
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