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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_12715_BGI-A2_v1.0 | ||||||||
Common Name | F383_01092 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | NF-YC | ||||||||
Protein Properties | Length: 264aa MW: 29685.6 Da PI: 6.305 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 178.1 | 8.5e-56 | 82 | 186 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdia 80 ql++fw++q ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+f+leltlrsw+h+eenkrrtl+k+dia Cotton_A_12715_BGI-A2_v1.0 82 QLQMFWANQmheIEQTTDFKNHSLPLARIKKIMKADEDVRMISAEAPVIFAKACEMFVLELTLRSWIHTEENKRRTLQKNDIA 164 89******988889********************************************************************* PP NF-YC 81 aavtrtdifdflvdivprdelk 102 aa++rtd+fdflvdi+prdelk Cotton_A_12715_BGI-A2_v1.0 165 AAISRTDVFDFLVDIIPRDELK 186 *******************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 5.97E-34 | 61 | 176 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.4E-21 | 104 | 167 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 3.2E-37 | 105 | 182 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MDQREKTQQQ QQQPVMGVVP GAGQMGYSTA YQTASMVASG TTGVAVPIQT QPSATFSSSP 60 HQLAYQQAQH FHHQQQQQQQ QQLQMFWANQ MHEIEQTTDF KNHSLPLARI KKIMKADEDV 120 RMISAEAPVI FAKACEMFVL ELTLRSWIHT EENKRRTLQK NDIAAAISRT DVFDFLVDII 180 PRDELKEEGL GVTKATIPLV GSPADIPYYY VPQHPVGSLG MIMGKPIDQA ALYPGQQPRP 240 PMAFMPWPQG QPQQQQSEQQ QSDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-58 | 90 | 182 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 154 | 160 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016701414.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-2-like | ||||
Refseq | XP_016755369.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-2-like, partial | ||||
Refseq | XP_017638968.1 | 0.0 | PREDICTED: nuclear transcription factor Y subunit C-2-like | ||||
Swissprot | Q655V5 | 5e-83 | NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4 | ||||
TrEMBL | A0A0B0NLR0 | 0.0 | A0A0B0NLR0_GOSAR; Nuclear transcription factor Y subunit C-2-like protein | ||||
TrEMBL | A0A1U8KL31 | 0.0 | A0A1U8KL31_GOSHI; nuclear transcription factor Y subunit C-2-like | ||||
STRING | Gorai.002G110200.1 | 1e-155 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM478 | 28 | 160 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 8e-82 | nuclear factor Y, subunit C2 |
Publications ? help Back to Top | |||
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