PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Cotton_A_09599_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

NAC

Protein Properties

Length: 246aa MW: 28370.7 Da PI: 6.0575

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_09599_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	150.2	1e-46	4	134	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratks 80 p+GfrF Pt+eelv++yL+++++g++ e+++vi+ ++iy+vePwdLp+ +++ ++++w++F++r++++a+g r+nr+t+s Cotton_A_09599_BGI-A2_v1.0 4 PAGFRFFPTEEELVSFYLRNQLDGRRQEMHSVIPVLNIYDVEPWDLPQlageRCRRDTEQWFYFTPRQEREARGGRANRTTAS 86 89*************************999***********656666666788******************** PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 gyWkatg+ v+s++++++g+kkt+vfykg+ap+g+kt+W m+eyr+ Cotton_A_09599_BGI-A2_v1.0 87 GYWKATGSPSYVYSSDDRVIGMKKTMVFYKGKAPSGKKTKWKMNEYRA 134 ********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.85E-49	2	161	IPR003441	NAC domain
PROSITE profile	PS51005	48.692	3	162	IPR003441	NAC domain
Pfam	PF02365	2.3E-23	4	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010200	Biological Process	response to chitin
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MEIPAGFRFF PTEEELVSFY LRNQLDGRRQ EMHSVIPVLN IYDVEPWDLP QLAGERCRRD 60 TEQWFYFTPR QEREARGGRA NRTTASGYWK ATGSPSYVYS SDDRVIGMKK TMVFYKGKAP 120 SGKKTKWKMN EYRAIEAVPN PTAVTTTPML RHEFSLCRIY VVSGSFRAFD RRPLETVSRA 180 TQLHENRTAT FSERASMMEV TSSSSTSHSG GDHSDQPEAN EDDIWEMVND LEEPPLGWEQ 240 MNWTGV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	1e-33	1	160	13	166	Stress-induced transcription factor NAC1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC110648	0.0	KC110648.1 Gossypium hirsutum NAC protein 13 (NAC13) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017628399.1	0.0	PREDICTED: NAC domain-containing protein 90-like
Swissprot	Q9FMR3	6e-91	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A1U8P0V9	0.0	A0A1U8P0V9_GOSHI; NAC domain-containing protein 90-like
STRING	Gorai.001G122800.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1445	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	3e-88	NAC domain containing protein 61

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]