PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_09357_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family HSF
Protein Properties Length: 447aa    MW: 50900.9 Da    PI: 4.6394
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_09357_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.71.2e-351172082102
                                 HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEES CS
                HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhk 84 
                                 Flkk+ye++ed+ ++ ++sws n nsf+v+d+ +f++++LpkyFkh+nf+SF+RQLn+YgF+k+++++         weF+++
  Cotton_A_09357_BGI-A2_v1.0 117 FLKKTYEMVEDPVTDPIVSWSINRNSFIVWDSYKFSEDLLPKYFKHKNFSSFIRQLNTYGFRKIDSDR---------WEFANE 190
                                 9********************999*****************************************999.........****** PP

                                 XXXXXXXXXXXXXXXXXX CS
                HSF_DNA-bind  85 sFkkgkkellekikrkks 102
                                 +F++gk++ll++ikr+++
  Cotton_A_09357_BGI-A2_v1.0 191 EFQRGKRHLLKNIKRRSR 208
                                 ***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467856.39E-33112206IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.9E-38113206IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.1E-57113206IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.8E-31117206IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-18117140IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-18155167IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340156180IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-18168180IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MVVPDNGGGE GLCLSYTTAF SKKMGDEINQ MESNNILVKE EPVAESSGEE DYQEALLIKA  60
VKEEEEDDND DETGVIDDMM NCGDCNNVSN YGSSSCSSSV DLPKPMEGLN ESGPPPFLKK  120
TYEMVEDPVT DPIVSWSINR NSFIVWDSYK FSEDLLPKYF KHKNFSSFIR QLNTYGFRKI  180
DSDRWEFANE EFQRGKRHLL KNIKRRSRYN RQQQGGVNCA NNSTSNIGLE AEVEILKKDR  240
SILQLEVLKL RQQQEESNHQ LSAVHERIRF AECRQQQMCN FIAKIAKYPS FINRLTKKRK  300
QQNIEIDEGE FSFSKKRKFL ETQVTKCLPG AMGMTDLSVK CRNQVDEEGL KSIQAAEISK  360
LLPDYKEKNN NQTLHDEKSS EPAMSSVYDV MSENLLGESS GVENATNEEL SSVNDSKIYL  420
ELEDLISWKQ CNWGGFASEL VEQTGCV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-27922064129Heat shock factor protein 1
5d5v_B6e-27922064129Heat shock factor protein 1
5d5v_D6e-27922064129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199205LKNIKRR
2297317KRKQQNIEIDEGEFSFSKKRK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR0674090.0KR067409.1 Gossypium hirsutum HSF28 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017644857.10.0PREDICTED: heat stress transcription factor A-7a-like
TrEMBLA0A1U8NVS40.0A0A1U8NVS4_GOSHI; heat stress transcription factor A-7a-like
STRINGGorai.009G032300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74981940
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-82heat shock transcription factor A2