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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cotton_A_07894_BGI-A2_v1.0 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
NAC |
Protein Properties |
Length: 375aa MW: 42948.2 Da PI: 6.3696 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_07894_BGI-A2_v1.0 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 170.6 | 5e-53 | 55 | 182 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksg 81
lppGfrFhPtdeel+ +yLk+k+eg ++el evi+ +d+yk++PwdLp k + +++ ew+fF++rd+ky++g+r+nratk+g
Cotton_A_07894_BGI-A2_v1.0 55 LPPGFRFHPTDEELIGYYLKRKTEGLEIEL-EVIPVIDLYKFDPWDLPeKsFLPKRDLEWFFFCPRDRKYPNGSRTNRATKAG 136
79****************************.99**************95334445667************************* PP
NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
yWkatgkd++v++ ++ ++g +ktLvfy+grap g +tdW+mheyrl
Cotton_A_07894_BGI-A2_v1.0 137 YWKATGKDRKVVC-QSDVTGYRKTLVFYRGRAPLGDRTDWIMHEYRL 182
*************.9999***************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 375 aa
Download sequence Send
to blast |
MILPFGGCIL WKLCSVLDKK SSVDKSFYFW IFQIFNTYSL LSGRFLRTFG SGASLPPGFR 60 FHPTDEELIG YYLKRKTEGL EIELEVIPVI DLYKFDPWDL PEKSFLPKRD LEWFFFCPRD 120 RKYPNGSRTN RATKAGYWKA TGKDRKVVCQ SDVTGYRKTL VFYRGRAPLG DRTDWIMHEY 180 RLSDEPSQGS PNQGAFALCR VVKRNEPKAS DARGEPKATM VGSSSTNIIL PVPRTCNSGN 240 ISCEASYPNK ESHYTSSEVM QVPRFEPVSV NTDPRGVWVS PDLILDSSKD YPQTCESTAQ 300 YFPQYEFPSS LTPWQQYEQT DFSPSSSYSN FGEIEHDDLS RIGYMSPYSG HASYMDFYGN 360 EGNDQTGLFN YMNPF
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 3e-52 | 54 | 205 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-52 | 54 | 205 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-52 | 54 | 205 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-52 | 54 | 205 | 16 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-52 | 54 | 205 | 19 | 169 | NAC domain-containing protein 19 |
3swm_B | 3e-52 | 54 | 205 | 19 | 169 | NAC domain-containing protein 19 |
3swm_C | 3e-52 | 54 | 205 | 19 | 169 | NAC domain-containing protein 19 |
3swm_D | 3e-52 | 54 | 205 | 19 | 169 | NAC domain-containing protein 19 |
3swp_A | 3e-52 | 54 | 205 | 19 | 169 | NAC domain-containing protein 19 |
3swp_B | 3e-52 | 54 | 205 | 19 | 169 | NAC domain-containing protein 19 |
3swp_C | 3e-52 | 54 | 205 | 19 | 169 | NAC domain-containing protein 19 |
3swp_D | 3e-52 | 54 | 205 | 19 | 169 | NAC domain-containing protein 19 |
4dul_A | 3e-52 | 54 | 205 | 16 | 166 | NAC domain-containing protein 19 |
4dul_B | 3e-52 | 54 | 205 | 16 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KC847232 | 0.0 | KC847232.1 Gossypium hirsutum NAC domain protein NAC55 mRNA, complete cds. |