PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Cotton_A_07802_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

C2H2

Protein Properties

Length: 362aa MW: 40749.6 Da PI: 6.7298

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_07802_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15	7.1e-05	283	305	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk F + + ++H +++ Cotton_A_07802_BGI-A2_v1.0 283 FMCGKCGKAFAVRGDWRTHEKNC 305 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.4E-5	195	222	No hit	No description
Gene3D	G3DSA:3.30.160.60	7.4E-6	199	218	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.076	199	226	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	201	221	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.61E-6	265	303	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.2E-5	279	303	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.642	283	303	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MADHPYSSFF SGWYKFNPLQ NYPSPNPPPQ HNPNLFTQNL YNNTTIFMRN DPTNTNSFFH 60 YQTSCTSSPP SPPVRKELPL LSLTPTPTRC EKEEEEHDDG VEDQDQDLYI CNGMSKGKEG 120 GGLVLSSGAA EDEDETVTVA LHIGLPSPTA SELASVLSSS SSFSEMRDKD GDEYPVNTLN 180 KGQYWIPTPS QILIGPTQFS CPVCCKTFNR YNNMQMHMWG HGSEYRKGPE SLKGSQPTGM 240 LRLPCYCCAP GCRNNIDHPR AKPLKDFRTL QTHYKRKHGI KPFMCGKCGK AFAVRGDWRT 300 HEKNCGKLWY CTCGSDFKHK RSLKDHIKAF GKGHAAYNIT ISGLEEDDDP ASEVEQDYDF 360 MQ

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MADHPYSSFF SGWYKFNPLQ NYPSPNPPPQ HNPNLFTQNL YNNTTIFMRN DPTNTNSFFH  60
YQTSCTSSPP SPPVRKELPL LSLTPTPTRC EKEEEEHDDG VEDQDQDLYI CNGMSKGKEG  120
GGLVLSSGAA EDEDETVTVA LHIGLPSPTA SELASVLSSS SSFSEMRDKD GDEYPVNTLN  180
KGQYWIPTPS QILIGPTQFS CPVCCKTFNR YNNMQMHMWG HGSEYRKGPE SLKGSQPTGM  240
LRLPCYCCAP GCRNNIDHPR AKPLKDFRTL QTHYKRKHGI KPFMCGKCGK AFAVRGDWRT  300
HEKNCGKLWY CTCGSDFKHK RSLKDHIKAF GKGHAAYNIT ISGLEEDDDP ASEVEQDYDF  360
MQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017610392.1	0.0	PREDICTED: zinc finger protein WIP2
Swissprot	Q9SVY1	1e-129	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A0D2NSJ1	0.0	A0A0D2NSJ1_GOSRA; Uncharacterized protein
STRING	Gorai.006G138700.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-124	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]