PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_07795_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family AP2
Protein Properties Length: 563aa    MW: 63358.1 Da    PI: 4.926
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_07795_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.97.1e-15217268155
                         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                 s y+GV++++  ++W A+I       k  k ++lg+f+t+eeAa+a++ a+ +l+g
  Cotton_A_07795_BGI-A2_v1.0 217 SIYRGVSRNSDFKKWQARIGKG----KDiKGIYLGTFDTEEEAARAYDVAAIRLKG 268
                                 57****************9983....247************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.73E-11124184IPR016177DNA-binding domain
CDDcd000181.57E-12124184No hitNo description
Gene3DG3DSA:3.30.730.102.1E-9125183IPR001471AP2/ERF domain
SMARTSM003801.8E-9125188IPR001471AP2/ERF domain
PROSITE profilePS5103212.668125182IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-16217277IPR016177DNA-binding domain
PfamPF008478.3E-10217268IPR001471AP2/ERF domain
CDDcd000183.87E-21217278No hitNo description
Gene3DG3DSA:3.30.730.106.4E-18218276IPR001471AP2/ERF domain
SMARTSM003807.7E-22218282IPR001471AP2/ERF domain
PROSITE profilePS5103217.49218276IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MNMSSQNIDE KLYNSLSPIV SYPLATDDDS NTEFLQNPDL FPMPHHQTCS LLSQDMTSSP  60
FPMELEVEEM SILGSNNIES SSVQRKNKQA QETHDKGNNN KENTSKRRRQ PRQEPLRIFG  120
ARSSSYRGVS RYTGRYEAFL WNNTDPTQKP KTGGYDDEVS AARAYDLAAL KLWGELAPLN  180
FPISNYKSDL VEMKLYTKHE YFRNIRRKSR GFSKGVSIYR GVSRNSDFKK WQARIGKGKD  240
IKGIYLGTFD TEEEAARAYD VAAIRLKGAN AVTNFDINEY DLNDILQSSK LPIGKGASKL  300
LQKSSIEDVI RKKRCVSDRN SLVYDEEDDS CTPNSNLDMN RIISSSLIYG FQNPDEFQAS  360
PTPIQGFNSF GNYMSTDGNP SFNFNLEYPF NVNSDGNFTI SGAAENYFGE MQPFEFSHNF  420
STLEKLHQIS SFPFLHPYHQ NPVEFPENLA SNGLGNCVGT NREFTGSLQG LLTLQGQDSL  480
KYLDQPEDVT TQNLPQNPIN FQTIRVPVYP LSGSYNAEAS SYGIFKEVPS TKENENDSTG  540
GNDESGQGAA MVEKPLLEKL EME
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017609540.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM
TrEMBLA0A1U8HVS40.0A0A1U8HVS4_GOSHI; AP2-like ethylene-responsive transcription factor BBM
STRINGGorai.006G139300.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17569610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.13e-68AP2 family protein