PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_07016_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family WOX
Protein Properties Length: 232aa    MW: 26474.3 Da    PI: 9.344
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_07016_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.14.1e-20765356
                                --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
                    Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56
                                +R+++t++ql  Lee++++  r+p+a+++++++++l    +++ ++V++WFqN++a+e+
  Cotton_A_07016_BGI-A2_v1.0  7 SRWCPTPQQLMMLEEMYRSgIRTPNANQIQQITSQLslygKIEGKNVFYWFQNHKARER 65
                                7*****************99*************************************98 PP
2Wus_type_Homeobox114.55.2e-37667364
           Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                                ++RW+Ptp+Q+++Lee+y+sG+rtPn+++iq+it++L+ yGkie+kNVfyWFQN+kaRer +
  Cotton_A_07016_BGI-A2_v1.0  6 SSRWCPTPQQLMMLEEMYRSGIRTPNANQIQQITSQLSLYGKIEGKNVFYWFQNHKARERLR 67
                                79*********************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.009267IPR001356Homeobox domain
SMARTSM003891.4E-5471IPR001356Homeobox domain
SuperFamilySSF466896.42E-11765IPR009057Homeodomain-like
PfamPF000466.9E-18765IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-7765IPR009057Homeodomain-like
CDDcd000867.25E-5865No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MAPAGSSRWC PTPQQLMMLE EMYRSGIRTP NANQIQQITS QLSLYGKIEG KNVFYWFQNH  60
KARERLRLRK KLTKQLQQQQ QLYHQLQHNP HFLHYLDSPA SPAFQHLSCY NPASANPFPQ  120
AGIHDEGGKQ VTNYTWNIDI PEKMDKNKAI MRMYGNDWLM MVDVGLPLSS LPCYSMISRP  180
PLKTLELFPV TASNLKEECN NININNNNIN SSNSLSSVSC NITPAKVPLS LP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017606056.11e-174PREDICTED: WUSCHEL-related homeobox 3-like
TrEMBLA0A1U8PRW31e-170A0A1U8PRW3_GOSHI; WUSCHEL-related homeobox 3-like
STRINGGorai.009G103500.11e-133(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74802642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.13e-34WOX family protein