PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Cotton_A_06763_BGI-A2_v1.0

Organism

Gossypium arboreum

Taxonomic ID

29729

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

CO-like

Protein Properties

Length: 314aa MW: 34251.3 Da PI: 6.4256

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cotton_A_06763_BGI-A2_v1.0	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	31	5.3e-10	24	62	3	41
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkgHtvvp 41 +++C+ +++ + +fC+++ ++lC +C ++ H+gH++v+ Cotton_A_06763_BGI-A2_v1.0 24 AKTCDACKSSAAAIFCRTDWVFLCLNCDSNFHSGHERVS 62 579****99***********************987 PP
2	zf-B_box	26.3	1.5e-08	62	106	4	42
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 +C+ +e+ ++ C+ + lC +C +H+ H++vp+ Cotton_A_06763_BGI-A2_v1.0 62 SMCEVCEQAPAAVTCKADAAALCVTCDADIHSAnplarrHERVPI 106 68****************************6689999999997 PP
3	CCT	70.7	3.5e-24	235	278	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRYkeKrk+RkFeK+irY+sRKa+AesRpR+KGrF+k++ Cotton_A_06763_BGI-A2_v1.0 235 REARVLRYKEKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRT 278 9*****************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.054	22	63	IPR000315	B-box-type zinc finger
SMART	SM00336	1.7E-8	22	63	IPR000315	B-box-type zinc finger
Pfam	PF00643	8.4E-8	25	62	IPR000315	B-box-type zinc finger
CDD	cd00021	3.25E-7	27	63	No hit	No description
PROSITE profile	PS50119	11.206	59	106	IPR000315	B-box-type zinc finger
Pfam	PF00643	9.0E-7	61	106	IPR000315	B-box-type zinc finger
CDD	cd00021	7.62E-9	63	106	No hit	No description
SMART	SM00336	7.1E-11	64	106	IPR000315	B-box-type zinc finger
Pfam	PF06203	3.1E-18	235	277	IPR010402	CCT domain
PROSITE profile	PS51017	16.668	235	277	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 314 aa Download sequence Send to blast
MGIEISGGTI IPGGWGAAAM AVAAKTCDAC KSSAAAIFCR TDWVFLCLNC DSNFHSGHER 60 VSMCEVCEQA PAAVTCKADA AALCVTCDAD IHSANPLARR HERVPIEPFY DSADSIVKSS 120 PFSFLVPTTD HNGTNCKQEI ESNKGDLFFT EMNSFIDFGY PNSSQHLHDA AMDSVVPVQT 180 PKPIIPVIND GNCFDTFSYQ TQSSLSHSVS SSSLEVGTVP DGNYHATQVG GSIDREARVL 240 RYKEKRKNRK FEKTIRYASR KAYAESRPRI KGRFAKRTET HNDDVDHMFN NSSSFAVGPA 300 GFMAETDYGV VPSF

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ618331	0.0	JQ618331.1 Gossypium hirsutum constans-like protein 1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017623833.1	0.0	PREDICTED: zinc finger protein CONSTANS-LIKE 5-like
Swissprot	Q9FHH8	1e-100	COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBL	A0A0D3R306	0.0	A0A0D3R306_GOSHE; CONSTANS-like 6 protein
STRING	Gorai.004G030300.1	0.0	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM24403	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	5e-99	CONSTANS-like 5

Publications ? help Back to Top
Vercruyssen L, et al. ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. Plant Cell, 2014. 26(1): p. 210-29 [PMID:24443518]