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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cotton_A_06134_BGI-A2_v1.0 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
AP2 |
Protein Properties |
Length: 390aa MW: 44044.4 Da PI: 9.9125 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_06134_BGI-A2_v1.0 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 35.6 | 2.3e-11 | 68 | 124 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55
s+++GV++++++gr++A+++d s+n +r k + g ++ +e Aa+a++ a+ k++g
Cotton_A_06134_BGI-A2_v1.0 68 SRFRGVSRHRWTGRFEAHLWDkGSWNPtQRkKGKQ-GAYDEEESAARAYDLAAIKYWG 124
789******************88887786625555.********************98 PP
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2 | AP2 | 49.6 | 1e-15 | 167 | 218 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g
Cotton_A_06134_BGI-A2_v1.0 167 SRYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAAHAYDIAAIEYRG 218
79****99**********99966...3.6*************************97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 390 aa
Download sequence Send
to blast |
MEIVTAKSEF SPGRTRLCTA EDNAIDTNCI KRRRRDHSNS ALGLSNQQQR HQQLQGDQPT 60 ATTVKRSSRF RGVSRHRWTG RFEAHLWDKG SWNPTQRKKG KQGAYDEEES AARAYDLAAI 120 KYWGTSTFTN FPVSDYGTEI EIMRSVTKEE YLASLRRRSS GFSRGVSRYR GVARHHHNGR 180 WEARIGRVFG NKYLYLGTYS TQEEAAHAYD IAAIEYRGIN AVTNFDLSTY IRWLKPGAND 240 ALISEQIKTA STTRLMMTSN IFPTEQTNGL TLFNSNPLTE KAIDIRKKGV VSPCPKTSPA 300 LSLLLRSSMF NKLVEQNLNA NYDQTEEKDV KEAIDKNGRG EMLCNEVDGG VLPFMCSNNR 360 GLESKESKVP LYNKTGQSMW NGALNLLTNA
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 93 | 101 | PTQRKKGKQ |