 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Cotton_A_04656_BGI-A2_v1.0 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
|
| Family |
TALE |
| Protein Properties |
Length: 356aa MW: 40183.1 Da PI: 6.5046 |
| Description |
TALE family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cotton_A_04656_BGI-A2_v1.0 | genome | BGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 29.3 | 1.5e-09 | 262 | 318 | 2 | 55 |
T--SS--HHHHHHHHHHHH...HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFe...knrypsaeereeLAkklgLterqVkvWFqNrRake 55
rkR ++ ke + L + + k +yps++++ LA+++gL+++q+ +WF N+R ++
Cotton_A_04656_BGI-A2_v1.0 262 RKRGKLPKEARQKLLDWWAkhyKWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 318
5555556666666655555222579*****************************885 PP
|
| 2 | ELK | 41.1 | 3.6e-14 | 238 | 259 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22
ELK qLlrKYsgyLgsLkqEF+
Cotton_A_04656_BGI-A2_v1.0 238 ELKGQLLRKYSGYLGSLKQEFM 259
9********************8 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009934 | Biological Process | regulation of meristem structural organization |
| GO:0048440 | Biological Process | carpel development |
| GO:0005634 | Cellular Component | nucleus |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 356 aa
Download sequence Send
to blast |
MEGVSNSTSC MMAFGHNSNG LCPMTVMPLT AFHPHDQHQY HHHHNSDFNS LFLPLAPTNN 60
QDQNHNSSSG SSMIIDDQSN TTNNNTGCYF MESNDGSSSS VKAKIMAHPH YHRLVAAYVN 120
CQKVGAPPEV VARLEQVCAS AATMGPSTTG CIGEDPALDQ FMEAYSEMLA KYEQELSKTF 180
KDAMLFLQSV EYQFKALTVS PSNSGDTCGD AVNLNGSSEE EADMNNHHFI DPLAEDRELK 240
GQLLRKYSGY LGSLKQEFMK KRKRGKLPKE ARQKLLDWWA KHYKWPYPSE SQKLALAEST 300
GLDQKQINNW FINQRKRHWK PSEDMQFVVM EATYPHYFMD NILGNPFPMD LSHALL
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 253 | 262 | LKQEFMKKRK |
| 2 | 259 | 266 | KKRKRGKL |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'. |
