PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_04436_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 52aa    MW: 5834.87 Da    PI: 9.6381
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_04436_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.5e-071435122
                                TSSS-HHHHHHHHHHHHHTTTT CS
             Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg 22
                                +grW++eEd +l+ +++++G+g
  Cotton_A_04436_BGI-A2_v1.0 14 KGRWSPEEDSKLKGYIEKYGTG 35
                                79******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.79E-5336IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.0E-10535IPR009057Homeodomain-like
PfamPF002492.1E-51436IPR001005SANT/Myb domain
CDDcd001670.003561635No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 52 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGRWSPE EDSKLKGYIE KYGTGFGLLS LKKLVCITYI HT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0527217e-46KM052721.1 Gossypium hirsutum RAX-like transcription factor RAX2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016713936.19e-24PREDICTED: transcription factor MYB36-like
RefseqXP_016713937.19e-24PREDICTED: transcription factor MYB36-like
SwissprotQ9FKL23e-17MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A1U8LH252e-22A0A1U8LH25_GOSHI; transcription factor MYB36-like
STRINGEOY317641e-16(Theobroma cacao)
STRINGevm.model.supercontig_95.691e-16(Carica papaya)
STRINGXP_002523702.17e-17(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1757738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.11e-19myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]