![PlantTFDB](images/title_pic.jpg) |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cotton_A_03637_BGI-A2_v1.0 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family |
LFY |
Protein Properties |
Length: 406aa MW: 45106.8 Da PI: 7.0511 |
Description |
LFY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cotton_A_03637_BGI-A2_v1.0 | genome | BGI | View CDS |
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Signature Domain? help Back to Top |
![Signature Domain](draw_signature_domain.php?sp=Gar&pid=Cotton_A_03637_BGI-A2_v1.0) |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | FLO_LFY | 638.3 | 1.1e-194 | 1 | 387 | 1 | 385 |
FLO_LFY 1 mdpeafsas.lfkwdpraaaaapparlleeaavseapleaaaaaaarklr......eleelfkayGvryltvakiaelGftvs 76
mdpe+f++ +fkwdpr ++a++parl+e a++++p+++a+aaaa + ++eelf+ayG+ry+t+akiaelGftv+
Cotton_A_03637_BGI-A2_v1.0 1 MDPETFASGsFFKWDPRGMMAPTPARLMEAVAAVPQPQTVAVAAAAAYMGrprelgGIEELFQAYGIRYYTAAKIAELGFTVN 83
9****977559***********9*****99999999966665555544334777889************************** PP
FLO_LFY 77 tLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkll......sedeetaldalsqeglseep 153
tL++mk+eeld++m+s+s+ifr++llvGeryGikaavraerrrleee+ ++rr+l+ ++ ++aldalsqeglseep
Cotton_A_03637_BGI-A2_v1.0 84 TLLGMKEEELDEMMNSVSQIFRWELLVGERYGIKAAVRAERRRLEEED--SRRRHLVlgdtttTTTAANALDALSQEGLSEEP 164
**********************************************88..66666663554333333449************* PP
FLO_LFY 154 vqeekeaagsggeglgeaelvaaeekkseeekkkaskkkqkrkkkkelkseededee.eeededeegsgedgeerqrehPfiv 235
vq+ekeaagsgg+g ++e+v ++k++ ++++ +kk ++ ++ ++ e ++d+++ ++g +g erqrehPfiv
Cotton_A_03637_BGI-A2_v1.0 165 VQQEKEAAGSGGGG--TWEMVIGGG-----RRKQQ---RRRKGQKKVVEVDNGDEFEgGDDDDENGDGGGGGYERQREHPFIV 237
**********9999..999999883.....23333...22222333333334444440444445555677788********** PP
FLO_LFY 236 tepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeea 318
tepgevargkknGLDYLf+LyeqCr+fL+qvq+iak+rGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeea
Cotton_A_03637_BGI-A2_v1.0 238 TEPGEVARGKKNGLDYLFHLYEQCRDFLIQVQNIAKDRGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEA 320
*********************************************************************************** PP
FLO_LFY 319 snalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlerska 385
snalrrafkergenvGawrqacykplv+iaarqgwdida+fnahprL+iWYvPtkLrqLCh+er+ a
Cotton_A_03637_BGI-A2_v1.0 321 SNALRRAFKERGENVGAWRQACYKPLVSIAARQGWDIDAIFNAHPRLAIWYVPTKLRQLCHAERNGA 387
****************************************************************975 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity |
GO:0010582 | Biological Process | floral meristem determinacy |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0031490 | Molecular Function | chromatin DNA binding |
GO:0042803 | Molecular Function | protein homodimerization activity |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
Protein Sequence Length: 406 aa
Download sequence Send
to blast |
MDPETFASGS FFKWDPRGMM APTPARLMEA VAAVPQPQTV AVAAAAAYMG RPRELGGIEE 60 LFQAYGIRYY TAAKIAELGF TVNTLLGMKE EELDEMMNSV SQIFRWELLV GERYGIKAAV 120 RAERRRLEEE DSRRRHLVLG DTTTTTTAAN ALDALSQEGL SEEPVQQEKE AAGSGGGGTW 180 EMVIGGGRRK QQRRRKGQKK VVEVDNGDEF EGGDDDDENG DGGGGGYERQ REHPFIVTEP 240 GEVARGKKNG LDYLFHLYEQ CRDFLIQVQN IAKDRGEKCP TKVTNQVFRY AKKAGASYIN 300 KPKMRHYVHC YALHCLDEEA SNALRRAFKE RGENVGAWRQ ACYKPLVSIA ARQGWDIDAI 360 FNAHPRLAIW YVPTKLRQLC HAERNGAAVV AAASSSVSGG HDHMGF
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT5G61850.1 | 1e-154 | floral meristem identity control protein LEAFY (LFY) |