PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_02211_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | WOX | ||||||||
Protein Properties | Length: 200aa MW: 22858.2 Da PI: 9.3415 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.6 | 1.4e-20 | 7 | 66 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Lee++++ ++p+a+++++++++l +++ ++V++WFqN++a+e++ Cotton_A_02211_BGI-A2_v1.0 7 SRWCPTPEQVMILEEMYRSgVKTPNATQIQQITSHLsfygKIEGKNVFYWFQNHKARERQ 66 7*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 120.3 | 7.9e-39 | 6 | 67 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++RW+PtpeQ++iLee+y+sG++tPn+ +iq+it++L+ yGkie+kNVfyWFQN+kaRerqk Cotton_A_02211_BGI-A2_v1.0 6 SSRWCPTPEQVMILEEMYRSGVKTPNATQIQQITSHLSFYGKIEGKNVFYWFQNHKARERQK 67 79***********************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00389 | 2.6E-4 | 4 | 71 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-8 | 7 | 66 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.71E-11 | 7 | 67 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 2.8E-18 | 7 | 66 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.58E-5 | 8 | 67 | No hit | No description |
PROSITE profile | PS50071 | 10.042 | 12 | 67 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MCPAGSSRWC PTPEQVMILE EMYRSGVKTP NATQIQQITS HLSFYGKIEG KNVFYWFQNH 60 KARERQKLRR KLTKQLQLQQ QQLFHHYFDS LPSPPFQRLS YYNSPPPFPQ VGVHDAAAAA 120 KQGMNYTWKL DVSERMDVDK SMMKIYGGDL LMMVDLSSPS LSSPCFFTTT TTGPPPLKTL 180 ELFPVTASNL KEECNKNNNG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required to initiate organ founder cells in a lateral domain of shoot meristems. Involved in the lateral sepal axis-dependent development of flowers, probably by regulating the proliferation of L1 cells at the lateral region of flower primordia. Required for the formation of the margin cells of the first and second whorl organs. {ECO:0000269|PubMed:11751640, ECO:0000269|PubMed:15169755}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016667682.1 | 1e-149 | PREDICTED: WUSCHEL-related homeobox 3-like isoform X2 | ||||
Swissprot | Q9SIB4 | 2e-45 | WOX3_ARATH; WUSCHEL-related homeobox 3 | ||||
TrEMBL | A0A1U8HNR0 | 1e-148 | A0A1U8HNR0_GOSHI; WUSCHEL-related homeobox 3-like isoform X2 | ||||
STRING | Gorai.003G138900.1 | 1e-129 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7480 | 26 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 1e-36 | WOX family protein |
Publications ? help Back to Top | |||
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