PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cotton_A_01675_BGI-A2_v1.0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | Dof | ||||||||
Protein Properties | Length: 248aa MW: 25615.4 Da PI: 8.7462 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.9 | 2.1e-38 | 24 | 84 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++l cprCdstntkfCyynny+ sqPryfCk+CrryWt+GG+lr++PvGgg+rkn k+s Cotton_A_01675_BGI-A2_v1.0 24 EQEQLLCPRCDSTNTKFCYYNNYNFSQPRYFCKSCRRYWTHGGTLRDIPVGGGTRKNAKRS 84 578899***************************************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-27 | 21 | 82 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.7E-33 | 26 | 82 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.696 | 28 | 82 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 30 | 66 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MPSSSADQCR RFNKGLNNGA PPPEQEQLLC PRCDSTNTKF CYYNNYNFSQ PRYFCKSCRR 60 YWTHGGTLRD IPVGGGTRKN AKRSRSNIGT TTTFSTTNAA PSAAATTTTA TTTSYNSFPL 120 PATPVLLPIS SNQGSFSIGG ESKGSNIFGS FTSLLNTQGP GFLALGGFGL GIAPSLDDVG 180 FGLGRGMWPL PCVGDGGAAG GGGGRGNGGA ATGMGNAWQF EGAETGFVGG DCFSWPDLAI 240 STPANGVK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269|PubMed:10758484}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX616606 | 0.0 | JX616606.1 Gossypium hirsutum clone NBRI_GE61393 microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_017643802.1 | 1e-179 | PREDICTED: dof zinc finger protein DOF3.4-like | ||||
Swissprot | Q39088 | 2e-60 | DOF34_ARATH; Dof zinc finger protein DOF3.4 | ||||
TrEMBL | A0A2P5W0G8 | 1e-178 | A0A2P5W0G8_GOSBA; Uncharacterized protein | ||||
STRING | Gorai.003G021000.1 | 1e-138 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2286 | 28 | 74 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50410.1 | 1e-56 | OBF binding protein 1 |
Publications ? help Back to Top | |||
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