PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cotton_A_01631_BGI-A2_v1.0
Organism
Gossypium arboreum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family GRAS
Protein Properties Length: 532aa    MW: 60419.8 Da    PI: 6.7609
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cotton_A_01631_BGI-A2_v1.0genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS303.84e-931725312374
                        GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                                 +e L+++A ++++++l+laq +Larl ++ +sp+g+p+qR+a+yf+eAL + l++   +l    +++ +s+++ +++++a+k+
  Cotton_A_01631_BGI-A2_v1.0 172 IEELVRAAGCFDTQELQLAQVILARLGQRlRSPSGKPLQRAAFYFKEALLSLLTG---GLT--RTTRLSSWNDIVQTIKAYKA 249
                                 678*************************99*************************...444..4667777789********** PP

                        GRAS  84 fsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetge 163
                                 fs + Pi+ fsh+t+Nqa++eav       +HiiDfdi+ G+Q+++L++++ +R  ++   +R+T+v+++e   + e++ +++
  Cotton_A_01631_BGI-A2_v1.0 250 FSGINPIPMFSHFTTNQALMEAVLDGssPLIHIIDFDIGFGGQYASLMREMFERHdHSRKFIRVTAVVPEE--YAIETRLIKD 330
                                 **********************854436889************************556669********66..99999***** PP

                        GRAS 164 rLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe. 245
                                 +L +fA+el+++f++++++ +++e+l+++++++  gE++a+ l+  ++r l   +++    +++L+ +++++P++vv+v++e 
  Cotton_A_01631_BGI-A2_v1.0 331 NLVQFASELKLRFQIEFVLLRTFEMLSFKAFKFIDGEKTAILLSPLIFRSL--GLNV----TAFLNDLRRVNPTIVVFVDNEv 407
                                 *********************************************999999..3333....57*******************7 PP

                        GRAS 246 .adhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpv 327
                                  ++ +++sF + f++ le+y+++f+sl+a +  + e+ +k+E  ll+++i  +v ++ ++      t+  Wrer++ aG+++v
  Cotton_A_01631_BGI-A2_v1.0 408 wMESGTTSFRKNFVNGLEFYAMMFESLDAAVVGNGEWVRKIETLLLRPRILAAVETAARS------TAPPWRERFRGAGMRAV 484
                                 6677999************************9999*******************999887......99*************** PP

                        GRAS 328 plsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                 +ls+ a+ qa++ll kv+++g++v +++++lvl+W + +Lv++SaWr
  Cotton_A_01631_BGI-A2_v1.0 485 HLSQLAEFQAECLLGKVQVRGFHVAKRQAELVLCWYESALVATSAWR 531
                                 **********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.786145511IPR005202Transcription factor GRAS
PfamPF035141.4E-90172531IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MRVPVSSPQS NHCQSPKPNN NSNTSSTRNI SFHGATINSV PTSIYEPTSV LELRRSPSPG  60
HDNPVDHHQH QQQQQQHQAP LEWDEHVLRN MDWDSIMKDL GLDDESVPSI KTIPPQENHI  120
QNLPEFTSCE LTHPTEFNNL YDFYPSHNID ISNTTTYGFN NMGNFNSGFD FIEELVRAAG  180
CFDTQELQLA QVILARLGQR LRSPSGKPLQ RAAFYFKEAL LSLLTGGLTR TTRLSSWNDI  240
VQTIKAYKAF SGINPIPMFS HFTTNQALME AVLDGSSPLI HIIDFDIGFG GQYASLMREM  300
FERHDHSRKF IRVTAVVPEE YAIETRLIKD NLVQFASELK LRFQIEFVLL RTFEMLSFKA  360
FKFIDGEKTA ILLSPLIFRS LGLNVTAFLN DLRRVNPTIV VFVDNEVWME SGTTSFRKNF  420
VNGLEFYAMM FESLDAAVVG NGEWVRKIET LLLRPRILAA VETAARSTAP PWRERFRGAG  480
MRAVHLSQLA EFQAECLLGK VQVRGFHVAK RQAELVLCWY ESALVATSAW RC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-2417753025378Protein SCARECROW
5b3h_A4e-2417753024377Protein SCARECROW
5b3h_D4e-2417753024377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017642789.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232100.0SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A0D2NUZ60.0A0A0D2NUZ6_GOSRA; Uncharacterized protein
STRINGGorai.003G016500.10.0(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42912857
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-156GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]