 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cla022852 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
|
| Family |
MYB |
| Protein Properties |
Length: 294aa MW: 32591 Da PI: 6.8591 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cla022852 | genome | ICuGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 52 | 1.6e-16 | 14 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
+g+W++eEde+l+ +++++G+ +W + ++++g++R++k+c++rw++yl
Cla022852 14 KGPWSPEEDEKLKAYIQLHGTAgNWIALPHKIGLKRCGKSCRLRWLNYL 62
79******************99*************************97 PP
|
| 2 | Myb_DNA-binding | 39.5 | 1.3e-12 | 69 | 111 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
g +++eEd+++ ++ G++ W+ Ia+ ++ gRt++++k++w++
Cla022852 69 GGFSEEEDKIICSLFISIGSR-WSIIAAQLP-GRTDNDVKNYWNT 111
569******************.*********.***********97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 294 aa
Download sequence Send
to blast |
MGRAPCCDKE KVKKGPWSPE EDEKLKAYIQ LHGTAGNWIA LPHKIGLKRC GKSCRLRWLN 60
YLRPNIKHGG FSEEEDKIIC SLFISIGSRW SIIAAQLPGR TDNDVKNYWN TKLKKKLLGT 120
RKQYFSNNKL SSHSNSTDTA QALTNSAIEK LQLQMQLQAL QSSFSFNNVS TLWPPMCIEE 180
VKIAQTAQPP NENDVDGACC SVATPLLEGC AVDCTSIVTG KSPVGSSPTE LEDGGGREVE 240
CVKEMDGSSK ESLYWWSNDV DAKSAVATKL WDTASVDLQF EGIFKDFEQL GYSL
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}. |
