PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla022683
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family HSF
Protein Properties Length: 411aa    MW: 46532.4 Da    PI: 5.1572
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla022683genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.16.7e-34451372103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k++e++ed+ +++++sws+  nsf+v+d ++f++++Lp+yFkhsnf+SF+RQLn+YgF+kv+ ++         weF+++ F  g+++ll++ik
     Cla022683  45 FLTKTFEMVEDPLTDSIVSWSKARNSFIVWDYHKFSSTLLPRYFKHSNFSSFIRQLNTYGFRKVDPDR---------WEFANEGFLGGQRNLLRTIK 132
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r++++
     Cla022683 133 RRRHS 137
                   *9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004155.7E-5741134IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.5E-3641134IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.9E-3241134IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-184568IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.1E-3045134IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-188395IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434084108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-1896108IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0010200Biological Processresponse to chitin
GO:0010286Biological Processheat acclimation
GO:0034605Biological Processcellular response to heat
GO:0034620Biological Processcellular response to unfolded protein
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0071456Biological Processcellular response to hypoxia
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MDELKVKPEE SAVPTGTAAS SSSSSSSSVT PQPIEGLHDV GPPPFLTKTF EMVEDPLTDS  60
IVSWSKARNS FIVWDYHKFS STLLPRYFKH SNFSSFIRQL NTYGFRKVDP DRWEFANEGF  120
LGGQRNLLRT IKRRRHSHQS IQHQGRTCVE LGQFGLEAEL ERLIRDRSSL MAELVRLRQQ  180
HQSSREQIMA MEDRLEKAES KQKQIMTFLS KALKNPSFIQ KFIHSNQGRE LRGVEIGRKR  240
RLTASPSVEN LQDENVPVAV KQEELETSEQ DIETLLTVNF EDESSIEIPD PVSDLGHSAH  300
EELGIFSQLW AEDLIAGHPE EAIIVGNQSD VDVEVEDLIA EPPDWTEDLQ DLVDQMGFQL  360
ARVGRNGGYC RGATDVPVSL YPLKLIGMCR KKEACGKIRS FADSPDFFTI K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-234313427129Heat shock factor protein 1
5d5v_B1e-234313427129Heat shock factor protein 1
5d5v_D1e-234313427129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818230.0LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132570.0LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011649528.10.0PREDICTED: heat stress transcription factor A-2
SwissprotP411521e-126HSF30_SOLPE; Heat shock factor protein HSF30
TrEMBLA0A0A0LKS10.0A0A0A0LKS1_CUCSA; Uncharacterized protein
STRINGXP_004159544.10.0(Cucumis sativus)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82253143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-120heat shock transcription factor A2
Publications ? help Back to Top
  1. Scharf KD,Rose S,Thierfelder J,Nover L
    Two cDNAs for tomato heat stress transcription factors.
    Plant Physiol., 1993. 102(4): p. 1355-6
    [PMID:8278556]