PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla019523
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family HD-ZIP
Protein Properties Length: 844aa    MW: 92949.2 Da    PI: 6.0601
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla019523genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.32.6e-181876357
               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
               k  ++t+eq+++Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Cla019523 18 KYVRYTPEQVDALERVYAECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 76
               6789*****************************************************97 PP
2START1671.3e-521663732205
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 
                +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++ +++l +is+g  g+++l +++++
  Cla019523 166 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCNGVAARACGLVSLEPM-KVAEILKDRLSWFRDCRCVDVLSAISTGngGTIELLYMQTY 264
                68999*****************************************************.8999999999******************************* PP

                TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHH CS
      START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegakt 195
                a+++l++ Rdf+++Ry+ +l++g++vi+++S+ s +  p+    ss+vRae+lpSg+li+ +++g s +++v+hvdl+ ++++++lr+l++s+ + ++++
  Cla019523 265 APTTLAAaRDFWTLRYTTSLEDGSLVICERSLRSSTGGPSgppPSSFVRAEMLPSGYLIRACEGG-SLIHIVDHVDLDVWSVPEVLRPLYESTKILAQRM 363
                **********************************99999888899*******************9.********************************** PP

                HHHHTXXXXX CS
      START 196 wvatlqrqce 205
                +va+l++ ++
  Cla019523 364 TVAALRYVRQ 373
                *****99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.5971377IPR001356Homeobox domain
SMARTSM003897.1E-161581IPR001356Homeobox domain
PfamPF000467.1E-161876IPR001356Homeobox domain
SuperFamilySSF466892.22E-161880IPR009057Homeodomain-like
CDDcd000861.57E-161878No hitNo description
Gene3DG3DSA:1.10.10.601.6E-182076IPR009057Homeodomain-like
CDDcd146866.98E-670109No hitNo description
PROSITE profilePS5084825.167156383IPR002913START domain
Gene3DG3DSA:3.30.530.201.1E-20164357IPR023393START-like domain
SMARTSM002341.5E-48165374IPR002913START domain
SuperFamilySSF559618.65E-35166376No hitNo description
PfamPF018525.8E-50166373IPR002913START domain
SuperFamilySSF559619.48E-5413496No hitNo description
SuperFamilySSF559619.48E-5524598No hitNo description
PfamPF086701.5E-49699843IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    Send to blast
MALVVHRDSL NKQMDTSKYV RYTPEQVDAL ERVYAECPKP SSLRRQQLIR ECPILSNIEP  60
KQIKVWFQNR RCREKQRKEA SRLQTVNRKL TAMNKLLMEE NDRLQTQVSR LVYENGYMRQ  120
QLHTASGTTT DNSCESVVMS GQQHQQQNPT KHTQKDANNP AGLLAIAEET LAEFLSKATG  180
TAVDWVQMIG MKPGPDSIGI VAVSRNCNGV AARACGLVSL EPMKVAEILK DRLSWFRDCR  240
CVDVLSAIST GNGGTIELLY MQTYAPTTLA AARDFWTLRY TTSLEDGSLV ICERSLRSST  300
GGPSGPPPSS FVRAEMLPSG YLIRACEGGS LIHIVDHVDL DVWSVPEVLR PLYESTKILA  360
QRMTVAALRY VRQIAQEASG EIQLGGGRQP AVLRTFSQRL CRGFNDAVNG FVDDGWSLMD  420
SDGIEDVTVV INSSPNKFLC SQYNTSLYPT FGGVLCAKAS MLLQNVPPAL LVRFLREHRS  480
EWADYGVDAY SAACLKASAY AVPCARSGGF PSGQVILPLA NTVENEEFLE VVRLEGHAMF  540
PEEAALGGRD MYLLQLCSGV DENTVGACAQ LVFAPIDESF ADDAPLLPSG FRVIPLESKT  600
DAPAATRTLD LASTLEVRPG TTRPGGETDV TNYNLRSVLT IAFQFTFENH MRDSVAAMAR  660
QYVRTVVGSV QRVAMAIAPS QLGPQIGPKS LPGSPEALTL AQWIARSYRI HSGTELFQVE  720
SLSDDAILKQ LWHHSDTILC CSVKTNASPV FTFANQAGLD MLETTLVALQ DITLDKILDD  780
AGRKILCSEF SKIMQQGFAY LPAGICVSSM GRLVSYEQAI AWKVVNDDDV HHCLAFMFVN  840
WSFM
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008445207.10.0PREDICTED: homeobox-leucine zipper protein ATHB-14-like
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A1S3BC420.0A0A1S3BC42_CUCME; homeobox-leucine zipper protein ATHB-14-like
STRINGXP_008445207.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51763353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]