![PlantTFDB](images/title_pic.jpg) |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Cla019325 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family |
LFY |
Protein Properties |
Length: 385aa MW: 43188.8 Da PI: 6.5909 |
Description |
LFY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Cla019325 | genome | ICuGI | View CDS |
|
Signature Domain? help Back to Top |
![Signature Domain](draw_signature_domain.php?sp=Cla&pid=Cla019325) |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | FLO_LFY | 633.2 | 4.3e-193 | 1 | 372 | 1 | 385 |
FLO_LFY 1 mdpeafsaslfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrld 100
mdpea+sa+lfkwdpr ++ + l a +++ + + l +le+lf+ayG+ry+t+akiaelGftvstL+dmkdeel+d+m+sls+ifr+d
Cla019325 1 MDPEALSATLFKWDPRGMVGGGSGAPL-PAPLPP----YSLRPRELGLGGLEDLFQAYGIRYYTAAKIAELGFTVSTLLDMKDEELEDMMNSLSHIFRWD 95
9***************98855443332.232233....33556677799*************************************************** PP
FLO_LFY 101 llvGeryGikaavraerrrleeeeaekkrrkllsedeet..aldalsqeglseepvqeekeaagsggeglgeaelvaaeekkseeekkkaskkkqkrkkk 198
llvGeryGikaavraerrrl++e ++++rr+lls+d++t +ldalsqeglseepvq+ekea+gsgg+g ++e+vaa+e + kk+ ++k+ +k
Cla019325 96 LLVGERYGIKAAVRAERRRLDDETDSSRRRHLLSNDNTTnvVLDALSQEGLSEEPVQQEKEAVGSGGGG--AWEAVAAAEIR-----KKQ---RRKNGSK 185
*********************************9998876799**********************9999..99999998432.....222...2222222 PP
FLO_LFY 199 kelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyin 298
k++++ +ed++e+e +e+++ + +erqrehPfivtepgevargkknGLDYLf+LyeqCrefL+qvq+iakerGekcPtkvtnqvfryakkagasyin
Cla019325 186 KKQVMVMEEDHDENEGAGDEEENMEVSERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNIAKERGEKCPTKVTNQVFRYAKKAGASYIN 285
222334567777888888888889999************************************************************************* PP
FLO_LFY 299 kPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlerska 385
kPkmrhYvhCYalhcLdeeasnalr fkergenvGawrqacykplvaiaa qgwdida+fnahprL+iWYvPtkLrqLCh+er+ +
Cla019325 286 KPKMRHYVHCYALHCLDEEASNALRSVFKERGENVGAWRQACYKPLVAIAAAQGWDIDAIFNAHPRLAIWYVPTKLRQLCHAERNGS 372
************************************************************************************976 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity |
GO:0010582 | Biological Process | floral meristem determinacy |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0031490 | Molecular Function | chromatin DNA binding |
GO:0042803 | Molecular Function | protein homodimerization activity |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
Protein Sequence Length: 385 aa
Download sequence Send
to blast |
MDPEALSATL FKWDPRGMVG GGSGAPLPAP LPPYSLRPRE LGLGGLEDLF QAYGIRYYTA 60 AKIAELGFTV STLLDMKDEE LEDMMNSLSH IFRWDLLVGE RYGIKAAVRA ERRRLDDETD 120 SSRRRHLLSN DNTTNVVLDA LSQEGLSEEP VQQEKEAVGS GGGGAWEAVA AAEIRKKQRR 180 KNGSKKKQVM VMEEDHDENE GAGDEEENME VSERQREHPF IVTEPGEVAR GKKNGLDYLF 240 HLYEQCREFL IQVQNIAKER GEKCPTKVTN QVFRYAKKAG ASYINKPKMR HYVHCYALHC 300 LDEEASNALR SVFKERGENV GAWRQACYKP LVAIAAAQGW DIDAIFNAHP RLAIWYVPTK 360 LRQLCHAERN GSTASTSAAA PHLPF
|
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF059320 | 0.0 | AF059320.1 Cucumis sativus transcription activator LFY-like protein (CFL) mRNA, complete cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT5G61850.1 | 1e-108 | floral meristem identity control protein LEAFY (LFY) |