PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cla012000
Organism
Citrullus lanatus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
Family ERF
Protein Properties Length: 374aa    MW: 42431.3 Da    PI: 5.6036
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cla012000genomeICuGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.3e-1872130255
        AP2   2 gykGVrwdkkrgrWvAeIrdpse.ng....kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 ++GVr++  +g+WvAeIr+p   n+    k+  r +lg+f ta +Aa a+++a+k+++g
  Cla012000  72 NFRGVRQRT-WGKWVAEIREPIAsNNtrvkKKgSRLWLGTFATAHQAALAYDEAAKAMYG 130
                69****999.**********7567889*86448************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.2E-1371130IPR001471AP2/ERF domain
CDDcd000182.72E-2971140No hitNo description
Gene3DG3DSA:3.30.730.101.3E-2872140IPR001471AP2/ERF domain
SMARTSM003808.3E-3472144IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-1972140IPR016177DNA-binding domain
PROSITE profilePS5103221.58872138IPR001471AP2/ERF domain
PRINTSPR003674.0E-97384IPR001471AP2/ERF domain
PRINTSPR003674.0E-9104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MTSENSSGEK ISRKRRNGYV SVVDTLNKWK KLNNQLEDLA KDGVEEIRRV PAKGSKKGCM  60
RGKGGPQNSD CNFRGVRQRT WGKWVAEIRE PIASNNTRVK KKGSRLWLGT FATAHQAALA  120
YDEAAKAMYG PFARLNFPDS SSSPLKPVIV EHSDSISPVA SSSSSSSIFN GLSAEKMNCC  180
YSMDKQENCG YESMEELKVK VEETARNRVN YTDATFYDSN IGNRLTEGNI KEGLADVVRS  240
RDINRDSHDQ NDPSELCFKF EAMDTNGCND LNECNQYVLQ KFQSDPYART YWIPAEWEIG  300
DLGSAPVMEG KPMEIESYGD CRAFNRDLSL LLDRQKHMGV GDQRVDDCNF EFLRPDYDFG  360
LEEERKWLDL WFRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1672138260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818840.0LN681884.1 Cucumis melo genomic scaffold, anchoredscaffold00086.
GenBankLN7132620.0LN713262.1 Cucumis melo genomic chromosome, chr_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008464230.10.0PREDICTED: ethylene-responsive transcription factor ERF036
TrEMBLA0A1S3CL170.0A0A1S3CL17_CUCME; ethylene-responsive transcription factor ERF036
STRINGXP_008464230.10.0(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132862127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.11e-41ERF family protein