 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Cla011239 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
|
| Family |
MYB_related |
| Protein Properties |
Length: 226aa MW: 25368.2 Da PI: 5.9653 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Cla011239 | genome | ICuGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 48.7 | 1.7e-15 | 14 | 85 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT...........................-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...........................tWktIartmgkgRtlkqcksrwqk 46
rg+W+++Ed l ++++G+g +W+ Ia+ ++ gRt++++k++w++
Cla011239 14 RGPWSPQEDATLTAFINKHGTGgnwialprkaelpaevaelsptrhqtwRWAVIASQLP-GRTDNDVKNHWNT 85
89*********************************************************.***********97 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 226 aa
Download sequence Send
to blast |
MGRAPCCDKA SVKRGPWSPQ EDATLTAFIN KHGTGGNWIA LPRKAELPAE VAELSPTRHQ 60
TWRWAVIASQ LPGRTDNDVK NHWNTKLKKK FNLFSDPSIP TAVITDPPPC SAAANSLKLH 120
DQEHNININT NFMFSGPPPF ELKHNFEPQY QFPMLNHNNN NPVPELSTSS SSISLPIDQN 180
HLQFSGNGDG SDDAEILQSY YHGIYDQYLY EDHFMEGFDV SNYMGL
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AC234257 | 2e-49 | AC234257.1 Cucumis sativus chromosome 1 BAC clone ccbaa, complete sequence. |
| GenBank | LN681806 | 2e-49 | LN681806.1 Cucumis melo genomic scaffold, anchoredscaffold00025. |
| GenBank | LN713256 | 2e-49 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
