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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cla008771 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Citrullus
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Family | SRS | ||||||||
Protein Properties | Length: 388aa MW: 43216.5 Da PI: 9.4313 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 25.2 | 4.5e-08 | 50 | 85 | 5 | 40 |
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvk 40 + +C+ CGn a+ C +e C+ CC + C hv Cla008771 50 KPKCRVCGNVARSRCPYESCKSCCARNQNPCYIHVL 85 568*******************************94 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.6E-5 | 52 | 85 | IPR007818 | Protein of unknown function DUF702 |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MAAPSPTVSN NSSDTATTTA SAVTANVAVS SNHLANRTGT PPKTLRGLNK PKCRVCGNVA 60 RSRCPYESCK SCCARNQNPC YIHVLKANAT FPDKTPTSSP LFDKQSPDPS SSGTSHRVAS 120 LRQLSNNFSQ FNNVQIPLRS RKPLTRKDAA AINEWRFSKL REFRERNIEA ENEAFDRYMQ 180 NVNLLEEVFS MRSMIDGSLK DGPSINSSTE ANPEEMIHGL KLKLGSNPVR SDNSRKRIRE 240 IVEDGLRKFK KVKATDNVDE VTDHAEADKA ADQTNLNDGC KTVKGWHAKR ARALGDLIDK 300 LNKARNEEDL KSCLAMKHQL FNQHITTSSQ TESEETDTSK EQVIKKDLDS RKELGYSLPK 360 LINKTNIDQE TLNQIDAHFS SLKQIGNL |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681860 | 0.0 | LN681860.1 Cucumis melo genomic scaffold, anchoredscaffold00021. | |||
GenBank | LN713260 | 0.0 | LN713260.1 Cucumis melo genomic chromosome, chr_6. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022923586.1 | 0.0 | uncharacterized protein LOC111431225 | ||||
TrEMBL | A0A1S3BKF8 | 0.0 | A0A1S3BKF8_CUCME; uncharacterized protein LOC103490821 | ||||
STRING | XP_008448750.1 | 0.0 | (Cucumis melo) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7690 | 16 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32730.1 | 1e-91 |