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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Ciclev10033942m | ||||||||
Common Name | CICLE_v10033942mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | LFY | ||||||||
Protein Properties | Length: 399aa MW: 44468.3 Da PI: 7.8355 | ||||||||
Description | LFY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FLO_LFY | 637.3 | 2.4e-194 | 1 | 377 | 1 | 385 |
FLO_LFY 1 mdpeafsaslfkwdpraaaaapparlleeaavseap.....leaaaaaaark..lr.....eleelfkayGvryltvakiaelGftvstLvdmk 82 mdpeaf+aslfkwdpr ++a+ppar++ e++ ++++ + aaaa++ +r +leelf+ayG+ry t+akiaelGftv+tL+dmk Ciclev10033942m 1 MDPEAFTASLFKWDPRVVVAPPPARVQLEQVSQPPAvplgaA----AAAAYSalVRprelgGLEELFQAYGIRYHTAAKIAELGFTVNTLLDMK 90 9******************9***9999888776665443321....222222223366777********************************* PP FLO_LFY 83 deelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeet.aldalsqeglseepvqeekeaagsggeglgeaelva 175 deeld++m+sl ++fr++llvGeryGikaavraerrrl+e++ +rr++ls+d++t a+dalsqeglseepvq+ keaagsgg+g +e++ Ciclev10033942m 91 DEELDEMMNSLGHLFRWELLVGERYGIKAAVRAERRRLDEDD--LRRRHFLSSDTTTnAVDALSQEGLSEEPVQQDKEAAGSGGGG--PWEVAE 180 ****************************************87..78888898887766************************9999..787765 PP FLO_LFY 176 aeekkseeekkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqki 269 ++ kk++ +k r ++ d + e+e+d+de g+g +g+erqrehPfivtepgevargkknGLDYLf+LyeqCr+fL+qvq+i Ciclev10033942m 181 KK--------KKQRGRKGPRP-----RKVVDVNLEDENDDDEYGGGCGGMERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRDFLIQVQNI 261 44........23311111111.....2345777888899999**************************************************** PP FLO_LFY 270 akerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahp 363 akerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdida+fnahp Ciclev10033942m 262 AKERGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEASNALRRAFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHP 355 ********************************************************************************************** PP FLO_LFY 364 rLsiWYvPtkLrqLChlerska 385 rL iWYvPt+LrqLCh+er+ a Ciclev10033942m 356 RLGIWYVPTRLRQLCHAERNGA 377 *******************865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF01698 | 1.6E-204 | 1 | 376 | IPR002910 | Floricaula/leafy protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010077 | Biological Process | maintenance of inflorescence meristem identity | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0031490 | Molecular Function | chromatin DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0043621 | Molecular Function | protein self-association |
Sequence ? help Back to Top |
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Protein Sequence Length: 399 aa Download sequence Send to blast |
MDPEAFTASL FKWDPRVVVA PPPARVQLEQ VSQPPAVPLG AAAAAAYSAL VRPRELGGLE 60 ELFQAYGIRY HTAAKIAELG FTVNTLLDMK DEELDEMMNS LGHLFRWELL VGERYGIKAA 120 VRAERRRLDE DDLRRRHFLS SDTTTNAVDA LSQEGLSEEP VQQDKEAAGS GGGGPWEVAE 180 KKKKQRGRKG PRPRKVVDVN LEDENDDDEY GGGCGGMERQ REHPFIVTEP GEVARGKKNG 240 LDYLFHLYEQ CRDFLIQVQN IAKERGEKCP TKVTNQVFRY AKKAGASYIN KPKMRHYVHC 300 YALHCLDEEA SNALRRAFKE RGENVGAWRQ ACYKPLVAIA ARQGWDIDAI FNAHPRLGIW 360 YVPTRLRQLC HAERNGAGAA ASSSVSAGAE HSVILKPY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2vy1_A | 1e-109 | 216 | 375 | 2 | 161 | PROTEIN LEAFY |
2vy2_A | 1e-109 | 216 | 375 | 2 | 161 | PROTEIN LEAFY |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: In developing inflorescences, leaf primordia and very young leaves. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00095 | SELEX | Transfer from AT5G61850 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ995349 | 0.0 | DQ995349.1 Citrus reticulata LEAFY (LFY) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006436969.1 | 0.0 | floricaula/leafy homolog | ||||
Refseq | XP_006485166.1 | 0.0 | floricaula/leafy homolog | ||||
Swissprot | O04064 | 0.0 | FLLH_POPTR; Floricaula/leafy homolog | ||||
TrEMBL | A0A067F352 | 0.0 | A0A067F352_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5PJA8 | 0.0 | A0A2H5PJA8_CITUN; Uncharacterized protein | ||||
TrEMBL | V4VCY4 | 0.0 | V4VCY4_9ROSI; Uncharacterized protein | ||||
STRING | XP_006485166.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006436969.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7907 | 28 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61850.1 | 1e-149 | floral meristem identity control protein LEAFY (LFY) |
Link Out ? help Back to Top | |
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Phytozome | Ciclev10033942m |
Entrez Gene | 18045422 |
Publications ? help Back to Top | |||
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